yichangyu / training-modules

Materials for short, half-day workshops

Current Topics in Bioinformatics workshops

Audience	Computational Skills	Duration
Biologists	Beginner or intermediate R and/or beginner bash	2-3 hour workshops

This repository has teaching materials for 2-3 hour, hands-on workshops covering a variety of topics related to bioinformatics data analysis. The workshops will lead participants through performing different types of analyses using R/RStudio or Linux.

Some workshops will require a working knowledge of R or completion of the Introduction to R workshop. Other workshops will require a working knowledge of the bash scripting language or completion of the Introduction to Unix workshop.

** NOTE: Detailed information and preparation instructions for each of the workshops can be found by clicking on the workshop links in the table below.

These materials are developed for a trainer-led workshop, but also amenable to self-guided learning.

Current Workshops

Lessons	Prerequisites
Introduction to the command-line interface	None
Intermediate bash	Beginner bash or Intro to the command-line interface
Version control using Git and Github	Beginner bash or Intro to the command-line interface
Accessing genomic reference and experimental sequencing data	Beginner bash or Intro to the command-line interface
Exploring genomic variants using GEMINI	Beginner bash or Intro to the command-line interface

Previous Workshops

Lessons	Prerequisites
Introduction to R	None
Visualization in R	Beginner R or IntroR workshop
Functional analysis of gene lists	Beginner R or IntroR workshop
Reproducible research using R (Rmarkdown: report generation)	Beginner R or IntroR workshop

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These materials have been developed by members of the teaching team at the Harvard Chan Bioinformatics Core (HBC). These are open access materials distributed under the terms of the Creative Commons Attribution license (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.