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Yi Xianfu's Projects

nasqar icon nasqar

NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization

navi icon navi

An interactive cheatsheet tool for the command-line

nbnhhsh icon nbnhhsh

😩「能不能好好说话?」 拼音首字母缩写翻译工具

ncovmemory icon ncovmemory

2020新冠肺炎记忆:报道、非虚构与个人叙述(持续更新) Memory of 2020 nCov: Media Coverage, Non-fiction Writings, and Individual Narratives (Continuously updating)

ndarc16 icon ndarc16

4-day course at Instituto Gulbenkian de Ciência

neovim icon neovim

Vim-fork focused on extensibility and agility. Consider helping sustain Neovim development!

nerd-fonts icon nerd-fonts

Iconic font aggregator, collection, & patcher. 3,600+ icons, 50+ patched fonts: Hack, Source Code Pro, more. Glyph collections: Font Awesome, Material Design Icons, Octicons, & more

netdata icon netdata

Real-time performance monitoring, done right!

ngs-data-analysis icon ngs-data-analysis

This repository contains codes (perl, bash, python, visual basic) which were used for the analysis of NGS data. The main aim of the project was: Identification and characterization of plant long range enhancer. And to find the role of these long range chromatin interactions in gene regulation. For that we produced in-house data A. thaliana and did transcriptional profiling of the same to correlate gene expression with physical interaction between chromatin. Hi-C was used to capture the DNA elements that physically interact with their targets in the genome. To see the impact of stress on chromatin interactions we used untreated and stressed plants (heat treatment for abiotic and SA treatment to mimic biotic stress). We had identified thousands of long range chromatin interaction in WT, heat and salicylic acid treated plants.

ngs-pipeline icon ngs-pipeline

By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline

ngs-pipelines icon ngs-pipelines

Perl source codes for next generation (second generation) sequencing data analysis by integrating lots of open-source softwares.

ngs_data_processing icon ngs_data_processing

Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.

ngs_pipeline icon ngs_pipeline

My pipelines for RNA-seq, ChIP-seq, Hi-C and etc. NGS data.

ngsplot icon ngsplot

Quick mining and visualization of NGS data by integrating genomic databases

ngstools icon ngstools

Next-Generation Sequencing(NGS) toolkits.

nixnote2 icon nixnote2

Nixnote - A clone of Evernote for Linux

nnn icon nnn

:tangerine: The missing terminal file manager for X.

nocode icon nocode

The best way to write secure and reliable applications. Write nothing; deploy nowhere.

nomeiryoui icon nomeiryoui

No!! MeiryoUI is Windows system font setting tool on Windows 8.1/10.

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