zdavatz / covid19_ch

covid19 map for Switzerland using Esri Maps.

ypm

ywesee Pharma Monitor

Use Cases

1. Monitor RSS Feeds in file rss_feeds.txt
2. Monitor the RSS Feeds based on keywords in file keywords.txt
3. Make Hash-Tags out of Keywords and make Hash-Tags clickable.
4. Sort monitored articles by country.
5. Show article count by country.
6. Keywords and RSS-Feed-Links must be stored in a DB.

Running the App

meteor npm i
meteor

covid19_ch's Issues

Who is right Dänu or OpenZH

openZH/covid_19#97

adding longitude and latitude data

New sample files are now partially filled.

daily Cantons file:
https://github.com/zdavatz/covid19_ch/blob/master/data-cantons-csv/dd-covid19-ch-cantons-20200319-example.csv

Total file:
https://github.com/zdavatz/covid19_ch/blob/master/data-switzerland-csv/dd-covid19-ch-switzerland-20200319-example.csv

Comparing BAG with cantonal sources

openZH/covid_19#323

Show measures taken by Cantons on Map.

Measures_Corona_20_3.txt

python script to add data from openDataZH

We need to grab the data from here https://github.com/openZH/covid_19, see openZH/covid_19#29

Cumulative charts are misleading when not all data is available yet

See: daenuprobst/covid19-cases-switzerland#42

Excel files

Are there any Excel files with the data?

Limitation to 2020-03-27

The python scripts creates only data up to the date of 2020-03-27. Can you please update the python files.

Mamy thanks

Peter

dd-covid19-ch-switzerland-latest.csv:
date,country,hospitalized_with_symptoms,intensive_care,total_hospitalized,home_confinment,total_currently_positive,new_positive,recovered,released,deaths,total_positive,tests_performed
2020-03-06 00:00:00,CH,0,0,0,0,208,0,0,,0,0,0
2020-03-07 00:00:00,CH,0,0,0,0,263,0,0,,0,0,0
2020-03-08 00:00:00,CH,0,0,0,0,328,0,0,,0,0,0
2020-03-09 00:00:00,CH,0,0,0,0,376,0,0,,0,0,0
2020-03-10 00:00:00,CH,0,0,0,0,505,0,0,,0,0,0
2020-03-11 00:00:00,CH,0,0,0,0,640,0,0,,0,0,0
2020-03-12 00:00:00,CH,0,0,0,0,880,0,0,,0,0,0
2020-03-13 00:00:00,CH,0,0,0,0,1205,0,0,,0,0,0
2020-03-14 00:00:00,CH,0,0,0,0,1607,0,0,,0,0,0
2020-03-15 00:00:00,CH,0,0,0,0,2155,0,0,,0,0,0
2020-03-16 00:00:00,CH,0,0,0,0,2327,0,0,,0,0,0
2020-03-17 00:00:00,CH,0,0,0,0,2650,0,0,,0,0,0
2020-03-18 00:00:00,CH,0,0,0,0,3815,0,0,,0,0,0
2020-03-19 00:00:00,CH,0,0,0,0,5118,0,0,,0,0,0
2020-03-20 00:00:00,CH,0,0,0,0,6427,0,0,,0,0,0
2020-03-21 00:00:00,CH,0,0,0,0,7385,0,0,,0,0,0
2020-03-22 00:00:00,CH,0,0,0,0,8160,0,0,,0,0,0
2020-03-23 00:00:00,CH,0,0,0,0,9055,0,0,,0,0,0
2020-03-24 00:00:00,CH,0,0,0,0,10051,0,0,,0,0,0
2020-03-25 00:00:00,CH,0,0,0,0,11081,0,0,,0,0,0
2020-03-26 00:00:00,CH,0,0,0,0,11761,0,0,,0,0,0
2020-03-27 00:00:00,CH,0,0,0,0,11872,0,0,,0,0,0

BAG Fax formular

BAG Fax Formular for Covid19 Fälle und der Republik Artikel dazu.

Date Format

Is there a reason you don't use the ISO format for dates, e.g. 2020-03-21?

Confirmed Cases per Canton

Dears,
It's not useful to skip the denomination of every second canton on the x-axis.

Thank you for your dedication
Frank

Add population data

openZH/covid_19#40 (comment)

Error in digest.py

Do you really run this file digest.py? I got man error when executing it:

cd 'k:\myCloud\QGIS_Projekte_github\covid19_ch-zdavaz1'; & 'C:\Program Files (x86)\Python38-32\python.exe' 'c:\Users\tgdbepe4.vscode\extensions\ms-python.python-2020.6.91350\pythonFiles\lib\python\debugpy\launcher' '14722'
'--' 'k:\myCloud\QGIS_Projekte_github\covid19_ch-zdavaz1\python-scripts\digest.py'
Error in COVID19_Fallzahlen_FL_total.csv
Error in COVID19_Fallzahlen_Kanton_AG_total.csv
Error in COVID19_Fallzahlen_Kanton_AI_total.csv
Error in COVID19_Fallzahlen_Kanton_AR_total.csv
Error in COVID19_Fallzahlen_Kanton_BE_total.csv
Error in COVID19_Fallzahlen_Kanton_BL_total.csv
Error in COVID19_Fallzahlen_Kanton_GE_total.csv
Error in COVID19_Fallzahlen_Kanton_GR_total.csv
Error in COVID19_Fallzahlen_Kanton_JU_total.csv
Error in COVID19_Fallzahlen_Kanton_LU_total.csv
Error in COVID19_Fallzahlen_Kanton_NE_total.csv
Error in COVID19_Fallzahlen_Kanton_NW_total.csv
Error in COVID19_Fallzahlen_Kanton_OW_total.csv
Error in COVID19_Fallzahlen_Kanton_SG_total.csv
Error in COVID19_Fallzahlen_Kanton_SH_total.csv
Error in COVID19_Fallzahlen_Kanton_SO_total.csv
Error in COVID19_Fallzahlen_Kanton_SZ_total.csv
Error in COVID19_Fallzahlen_Kanton_TG_total.csv
Error in COVID19_Fallzahlen_Kanton_TI_total.csv
Error in COVID19_Fallzahlen_Kanton_UR_total.csv
Error in COVID19_Fallzahlen_Kanton_VD_total.csv
Error in COVID19_Fallzahlen_Kanton_VS_total.csv
Error in COVID19_Fallzahlen_Kanton_ZG_total.csv
Error in COVID19_Fallzahlen_Kanton_ZH_total.csv
Downloading https://raw.githubusercontent.com/daenuprobst/covid19-cases-switzerland/master/covid19_cases_switzerland.csv to k:\myCloud\QGIS_Projekte_github\covid19_ch-zdavaz1\python-scripts/probst\covid19_cases_switzerland.csv
Downloading https://raw.githubusercontent.com/daenuprobst/covid19-cases-switzerland/master/covid19_fatalities_switzerland.csv to k:\myCloud\QGIS_Projekte_github\covid19_ch-zdavaz1\python-scripts/probst\covid19_fatalities_switzerland.csv
Downloading https://raw.githubusercontent.com/daenuprobst/covid19-cases-switzerland/master/covid_19_cases_switzerland_standard_format.csv to k:\myCloud\QGIS_Projekte_github\covid19_ch-zdavaz1\python-scripts/probst\covid_19_cases_switzerland_standard_format.csv
Found 572 entries
PS K:\myCloud\QGIS_Projekte_github\covid19_ch-zdavaz1>
PS K:\myCloud\QGIS_Projekte_github\covid19_ch-zdavaz1>
PS K:\myCloud\QGIS_Projekte_github\covid19_ch-zdavaz1> cd 'k:\myCloud\QGIS_Projekte_github\covid19_ch-zdavaz1'; & 'C:\Program Files (x86)\Python38-32\python.exe' 'c:\Users\tgdbepe4.vscode\extensions\ms-python.python-2020.6.91350\pythonFiles\lib\python\debugpy\launcher' '15186'
'--' 'k:\myCloud\QGIS_Projekte_github\covid19_ch-zdavaz1\python-scripts\digest.py'
Error in COVID19_Fallzahlen_FL_total.csv
Error in COVID19_Fallzahlen_Kanton_AG_total.csv
Error in COVID19_Fallzahlen_Kanton_AI_total.csv
Error in COVID19_Fallzahlen_Kanton_AR_total.csv
Error in COVID19_Fallzahlen_Kanton_BE_total.csv
Error in COVID19_Fallzahlen_Kanton_BL_total.csv
Error in COVID19_Fallzahlen_Kanton_BS_total.csv
Error in COVID19_Fallzahlen_Kanton_FR_total.csv
Error in COVID19_Fallzahlen_Kanton_GE_total.csv
Error in COVID19_Fallzahlen_Kanton_GL_total.csv
Error in COVID19_Fallzahlen_Kanton_GR_total.csv
Error in COVID19_Fallzahlen_Kanton_JU_total.csv
Error in COVID19_Fallzahlen_Kanton_LU_total.csv
Error in COVID19_Fallzahlen_Kanton_NE_total.csv
Error in COVID19_Fallzahlen_Kanton_NW_total.csv
Error in COVID19_Fallzahlen_Kanton_OW_total.csv
Error in COVID19_Fallzahlen_Kanton_SG_total.csv
Error in COVID19_Fallzahlen_Kanton_SH_total.csv
Error in COVID19_Fallzahlen_Kanton_SO_total.csv
Error in COVID19_Fallzahlen_Kanton_SZ_total.csv
Error in COVID19_Fallzahlen_Kanton_TG_total.csv
Error in COVID19_Fallzahlen_Kanton_TI_total.csv
Error in COVID19_Fallzahlen_Kanton_UR_total.csv
Error in COVID19_Fallzahlen_Kanton_VD_total.csv
Error in COVID19_Fallzahlen_Kanton_VS_total.csv
Error in COVID19_Fallzahlen_Kanton_ZG_total.csv
Error in COVID19_Fallzahlen_Kanton_ZH_total.csv
Downloading https://raw.githubusercontent.com/daenuprobst/covid19-cases-switzerland/master/covid19_cases_switzerland.csv to k:\myCloud\QGIS_Projekte_github\covid19_ch-zdavaz1\python-scripts/probst\covid19_cases_switzerland.csv
Downloading https://raw.githubusercontent.com/daenuprobst/covid19-cases-switzerland/master/covid19_fatalities_switzerland.csv to k:\myCloud\QGIS_Projekte_github\covid19_ch-zdavaz1\python-scripts/probst\covid19_fatalities_switzerland.csv
Downloading https://raw.githubusercontent.com/daenuprobst/covid19-cases-switzerland/master/covid_19_cases_switzerland_standard_format.csv to k:\myCloud\QGIS_Projekte_github\covid19_ch-zdavaz1\python-scripts/probst\covid_19_cases_switzerland_standard_format.csv
Found 572 entries
PS K:\myCloud\QGIS_Projekte_github\covid19_ch-zdavaz1>

Dashboard not updating data

The dashboard is showing the message No Data on the top boxes with the Total cases, Hospitalizations, etc.
The last update date reads 8/26/2020 at 9.06pm

I am using Firefox and Windows 10 Pro
https://experience.arcgis.com/experience/c7d7182ddd804d67b736d52ad26df3ae

New cases vs confirmed cases plot

I would suggest to add the following plot: log(new confirmed cases) vs. total cases.

add fatalities from a reliable machine readable source

see: daenuprobst/covid19-cases-switzerland#19

Data from Federal Statistical Office and Geonames

to check and to use standards from Federal Statistical office (Kanton Nr) and from Geonames (coord from ADM1 and/or hospitals
suggestion_for_Zeno.xlsx

Thanks for your nice job and regards,

generate Report File based on data of Kt. Zürich

We need a report file, every time our script runs, to show which Kanton does not have up to date data. Sample: http://pillbox.oddb.org/amiko_report_de.html

Grab BAG XLXS file on a daily basis, compare with openzh data

see: openZH/covid_19#185

Ongoing discussion about Data formats

https://forum.opendata.ch/t/epidemic-curves/627/6, initiated by https://www.linkedin.com/in/francesca-de-chiara-30342437/

Use baryluk Parser to get daily data

See: openZH/covid_19#68 for the great scrapers by @baryluk

https://github.com/baryluk/covid_19/tree/master/scrapers and https://github.com/baryluk/covid_19/tree/master/scripts

total released number is getting smaller

The total released number is getting smaller day by day. That seems to be wrong.

Cantonal time series

Add time series on a cantonal base with fields such as confirmed cases, hospitalizations, intensive care, fatalities and doubling times...

Update Files via Dänu

Update latest data via Dänu:

1. Update the totals per day in new file according to Esri format:
   https://github.com/zdavatz/covid19_ch/blob/master/data-switzerland-csv/dd-covid19-ch-switzerland-latest.csv take total from here. Output file format has to be like this

2. Update cases per Canton in a new file according to Esri format:
   https://github.com/zdavatz/covid19_ch/blob/master/data-cantons-csv/dd-covid19-ch-cantons-latest.csv take the data from here. Output file has to be like this

trend and doubling time in relation to the active cases

I would suggest to calculate the 'Doubling Time Confirmed Cases' in relation to the active confirmed cases instead of the total confirmed cases, since the doubling time in relation to the total cases isn't very informative. Also I would suggest to change the trend curve from 'New vs Confirmed Cases' to 'New vs Active Confirmed Cases', since this would be more significant in terms of development.

Also the number of 'Total Released' is obviously to low. Isn't there any better data for this number?

The way you've done it so far is very good, but only until the first peak is reached.

Thank you for your great work anyway.
smnmsr

Sequence of running Python Files

Can you please add to the README in which sequence to run the python files: Thanks!

Source Issue Canton Aargau

referenced source from AG is outdated.
new buletin is with following link:
https://www.ag.ch/media/kanton_aargau/themen_1/coronavirus_1/lagebulletins/200330_KFS_Coronavirus_Lagebulletin_22.pdf

overview of all buletins here:
https://www.ag.ch/de/themen_1/coronavirus_2/lagebulletins/lagebulletins_1.jsp

probalby check first the newest bulelletins link...

COVID19_Fallzahlen_Kanton_GL_total.csv uses different column names compared to rest

See https://github.com/openZH/covid_19/blob/master/fallzahlen_kanton_total_csv/COVID19_Fallzahlen_Kanton_GL_total.csv

Keynumber: Total hospitalized

The number from total hospitalized is different in the main window and in the chart.

Falsche Hospitalisierungen für Zug

Auf dem Dashboard und in ihrer Excel-Tabelle geben sie für den Kanton Zug (8.4.) 1 Person als Hospitalisiert an, wenn ich auf die Quelle gehe für den Kanton Zug, welche sie angeben, lese ich dort von 12 Hospitalisierten.

https://www.zg.ch/behoerden/gesundheitsdirektion/statistikfachstelle/themen/gesundheit/corona

Warum stimmen ihre Zahlen nicht mit diesen Angaben überein? Ich bin ziemlich irritiert, da ich mich gerne auf ihre Zahlen verlassen möchte.

Data not anymore available

Hi Zeno

I consume the follow data file from your site for my excel dashboard:

https://raw.githubusercontent.com/zdavatz/covid19_ch/master/data-switzerland-csv/dd-covid19-openzh-switzerland-latest.csv
https://raw.githubusercontent.com/openZH/covid_19/master/COVID19_Fallzahlen_CH_total.csv
https://raw.githubusercontent.com/zdavatz/covid19_ch/master/data-cantons-csv/dd-covid19-openzh-cantons-latest.csv

These data are not anymore available. What is the reason for that?

Kind regards

Peter

Use KML file from Switzerland

zdavatz/covid2019_ch_map#5

https://github.com/zdavatz/covid2019_ch_map/files/4358295/kantone_50m.zip

"Negative Fatalities"?

The daily fatalities tab has for several cantons a negative figure displayed as if some fatalities came back to being alive.

Remove Error messages from baryluk parser

This output should only contain the successful data, not the errors or the error output: https://www.functor.xyz/covid_19/scrapers/outputs/latest.txt

If the script fails, then just ad a timestamp when it failed.