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chocolatechipsimulator

Simulate chocolate chips on a cookie

closesamples

Package for picking taxa randomly, and then getting the nearest close relative you actually have data for.

clustermq

R package to send function calls as jobs on LSF, SGE, Slurm, PBS/Torque, or each via SSH

cnc

Info for family CNC work

coccoe

Code of Conduct + Code of Ethics Test

collegetables

Making a website to help my kids with their college search.

comparativemethodsinr

A book for teaching people how to do comparative methods in R

continuoustraits

convertsolution

Finds lines in markdown to convert to underscores for student exercises

cookbook

Family recipes

corhmm

Fits a generalized form of the covarion model that allows different transition rate classes on different portions of a phylogeny by treating rate classes as “hidden” states in a Markov process.

cottonwood

courseschedulemaker

Shiny app to schedule courses

ctv

CRAN Task View Initiative

ctv-phylogenetics

CRAN Task View: Phylogenetics

cv

CV done with R, markdown, and pandoc

darwinday

darwindaytn

SinglePaged - Simple Jekyll template

dbgraphnav

Automatically exported from code.google.com/p/dbgraphnav

dentist

R package to sample points around a specified distance from the maximum likelihood estimates. This should be a better way to estimate uncertainty than using the Hessian of the likelihood equation. It works by "denting" the likelihood surface to make a ridge at your desired ∆lnL and then "walks" around this dented surface, sampling points.

discrete_drake_2021

Workflow to run analysis of discrete traits

diversificationlives

Response to Louca & Pennell and Pagel

dndscv

dN/dS methods to quantify selection in cancer and somatic evolution

docker-centos7-slurm

Slurm Docker Container on CentOS 7

docker-machine-port-forwarder

Simple bash script that makes it easier to forward ports from Docker Machine

docs

Serves as the master copy of important public documents, such as the constitution

doredis

R/foreach Redis backend for parallel computing

drake-examples

Example workflows for the drake R package

drake_knoxdata

Examples of using drake for the KnoxData group (https://www.meetup.com/knoxdata/)

drake_simple

Basic template file for students in phylometh