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jsphylotastic

Minimal test examples of using packages for javascript tree viewing

klchecker

Package to implement test of Jhwueng et al. 2014 for comparing KL to AIC and relatives

labmisc

Miscellaneous scripts from the O'Meara lab

laser

Mirror of Rabosky's laser package

lightningtimer

A timer for lightning talks. Made originally for the Evolution meetings in 2013, updated for 2014.

loblollycomparativeworkshop

Website for the Loblolly Comparative Workshop

medfordma

Info about Medford, MA, covid

meetingscripts

Scripts used to assign people to workshops and check diversity

micajahplanningdocs

Planning docs of the Micajah Pond development in Plymouth, MA

minecraftservers

Docker compose files, and also worlds, so my kids can play minecraft on a local server

misconduct

Package to check names against a misconduct database to flag for manual inspection

missecomparison

Compare misse to other methods

monophy

R package to explore monophyly

morphystruct

Structure, but for morphology

mrfisher

Automatically exported from code.google.com/p/mrfisher

naomilearning

nsfgrantparser

Ways to extract grant info from NSF

omearatenure

Brian O'Meara tenure packet (in progress)

paleotree

R library for analyzing, time-scaling and simulating phylogenies of extinct/fossil lineages. Also plots diversity curves for stratigraphic range data and phylogenies, including combinations of these two data types.

pbd

Protracted Birth-Death model in R

phrapl

phrapl-manual

phraplweb

Website to host phrapl content

phybase

Fork for Liang Liu's 1.4 version; used for teaching phylometh

phydocker

Dockerfile for phylogenetics in R

phydockerlite

A lighter weight R studio interface to phylogenetics software in R: it focuses on just the main R phylo packages, not installing

phylogenerator

Automated Phylogeny Generation for Ecologists

phylogeneticstaskview

Draft of a resurrected task view for phylogenetics in R

phylogenies_as_models

code for creating a js/shiny page for addressing NGSS cross cutting concept: Scale Proportion and Quantity (using models to study systems that are too large or too small), MS-LS4-Biological Evolution: Unity and Diversity, HS-LS4-6 Biological Evolution: Unity and Diversity

phylogeny_training

Dataset of figures from PLOS One papers matching "phylogeny"