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A conda-smithy repository for r-quarto.

License: BSD 3-Clause "New" or "Revised" License

Batchfile 48.30% Shell 51.70%

r-quarto-feedstock's Introduction

About r-quarto-feedstock

Feedstock license: BSD-3-Clause

Home: https://github.com/quarto-dev/quarto-r

Package license: GPL-2.0-or-later

Summary: Convert R Markdown documents and 'Jupyter' notebooks to a variety of output formats using 'Quarto'.

Current build status

All platforms:

Current release info

Name Downloads Version Platforms
Conda Recipe Conda Downloads Conda Version Conda Platforms

Installing r-quarto

Installing r-quarto from the conda-forge channel can be achieved by adding conda-forge to your channels with:

conda config --add channels conda-forge
conda config --set channel_priority strict

Once the conda-forge channel has been enabled, r-quarto can be installed with conda:

conda install r-quarto

or with mamba:

mamba install r-quarto

It is possible to list all of the versions of r-quarto available on your platform with conda:

conda search r-quarto --channel conda-forge

or with mamba:

mamba search r-quarto --channel conda-forge

Alternatively, mamba repoquery may provide more information:

# Search all versions available on your platform:
mamba repoquery search r-quarto --channel conda-forge

# List packages depending on `r-quarto`:
mamba repoquery whoneeds r-quarto --channel conda-forge

# List dependencies of `r-quarto`:
mamba repoquery depends r-quarto --channel conda-forge

About conda-forge

Powered by NumFOCUS

conda-forge is a community-led conda channel of installable packages. In order to provide high-quality builds, the process has been automated into the conda-forge GitHub organization. The conda-forge organization contains one repository for each of the installable packages. Such a repository is known as a feedstock.

A feedstock is made up of a conda recipe (the instructions on what and how to build the package) and the necessary configurations for automatic building using freely available continuous integration services. Thanks to the awesome service provided by Azure, GitHub, CircleCI, AppVeyor, Drone, and TravisCI it is possible to build and upload installable packages to the conda-forge anaconda.org channel for Linux, Windows and OSX respectively.

To manage the continuous integration and simplify feedstock maintenance conda-smithy has been developed. Using the conda-forge.yml within this repository, it is possible to re-render all of this feedstock's supporting files (e.g. the CI configuration files) with conda smithy rerender.

For more information please check the conda-forge documentation.

Terminology

feedstock - the conda recipe (raw material), supporting scripts and CI configuration.

conda-smithy - the tool which helps orchestrate the feedstock. Its primary use is in the construction of the CI .yml files and simplify the management of many feedstocks.

conda-forge - the place where the feedstock and smithy live and work to produce the finished article (built conda distributions)

Updating r-quarto-feedstock

If you would like to improve the r-quarto recipe or build a new package version, please fork this repository and submit a PR. Upon submission, your changes will be run on the appropriate platforms to give the reviewer an opportunity to confirm that the changes result in a successful build. Once merged, the recipe will be re-built and uploaded automatically to the conda-forge channel, whereupon the built conda packages will be available for everybody to install and use from the conda-forge channel. Note that all branches in the conda-forge/r-quarto-feedstock are immediately built and any created packages are uploaded, so PRs should be based on branches in forks and branches in the main repository should only be used to build distinct package versions.

In order to produce a uniquely identifiable distribution:

  • If the version of a package is not being increased, please add or increase the build/number.
  • If the version of a package is being increased, please remember to return the build/number back to 0.

Feedstock Maintainers

r-quarto-feedstock's People

Contributors

cbrueffer avatar conda-forge-admin avatar conda-forge-curator[bot] avatar github-actions[bot] avatar mfansler avatar regro-cf-autotick-bot avatar

Watchers

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r-quarto-feedstock's Issues

will this autoupdate?

Comment:

i had to install quarto with their system installer :( to get the latest version; 1.4.8. it had a fix. the version here is 1.2.

quarto: command not found

Solution to issue cannot be found in the documentation.

  • I checked the documentation.

Issue

Quarto is not found after installation.

I used conda install -n notebook -y r-quarto and the installation was successful but when I try to run quarto, as in quarto check, I get command not found.

The notebook environment is active:

$ conda env list
# conda environments:
#
base                     /srv/conda
notebook              *  /srv/conda/envs/notebook

and r-quarto is installed:

$ conda list | grep quarto
r-quarto                  1.2               r42hc72bb7e_1    conda-forge

The PATH environment variable is

$ echo $PATH
/srv/conda/envs/notebook/bin:/srv/conda/condabin:/home/raniere/.local/bin:/home/raniere/.local/bin:/srv/conda/envs/notebook/bin:/srv/conda/bin:/srv/npm/bin:/usr/lib/rstudio-server/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin

Installed packages

# packages in environment at /srv/conda/envs/notebook:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                  2_kmp_llvm    conda-forge
_r-mutex                  1.0.1               anacondar_1    conda-forge
aiohttp                   3.8.4                    pypi_0    pypi
aiosignal                 1.3.1                    pypi_0    pypi
alembic                   1.8.1              pyhd8ed1ab_0    conda-forge
anyio                     3.6.1              pyhd8ed1ab_1    conda-forge
argon2-cffi               21.3.0             pyhd8ed1ab_0    conda-forge
argon2-cffi-bindings      21.2.0           py37h540881e_2    conda-forge
async-timeout             4.0.2                    pypi_0    pypi
async_generator           1.10                       py_0    conda-forge
asynctest                 0.13.0                   pypi_0    pypi
attrs                     22.1.0             pyh71513ae_1    conda-forge
babel                     2.10.3             pyhd8ed1ab_0    conda-forge
backcall                  0.2.0              pyh9f0ad1d_0    conda-forge
backports                 1.0                        py_2    conda-forge
backports.functools_lru_cache 1.6.4              pyhd8ed1ab_0    conda-forge
beautifulsoup4            4.11.1             pyha770c72_0    conda-forge
binutils_impl_linux-64    2.38                 h2a08ee3_1    defaults
binutils_linux-64         2.38.0               hc2dff05_0    defaults
blas                      2.116                  openblas    conda-forge
blas-devel                3.9.0           16_linux64_openblas    conda-forge
bleach                    5.0.1              pyhd8ed1ab_0    conda-forge
blinker                   1.5                pyhd8ed1ab_0    conda-forge
brotlipy                  0.7.0           py37h540881e_1004    conda-forge
bwidget                   1.9.14               ha770c72_1    conda-forge
bzip2                     1.0.8                h7f98852_4    conda-forge
c-ares                    1.18.1               h7f98852_0    conda-forge
ca-certificates           2022.12.7            ha878542_0    conda-forge
cairo                     1.16.0            h18b612c_1001    conda-forge
certifi                   2022.12.7          pyhd8ed1ab_0    conda-forge
certipy                   0.1.3                      py_0    conda-forge
cffi                      1.15.1           py37h43b0acd_0    conda-forge
charset-normalizer        2.1.1              pyhd8ed1ab_0    conda-forge
cryptography              38.0.2           py37h38fbfac_0    conda-forge
curl                      7.87.0               h5eee18b_0    defaults
debugpy                   1.6.3            py37hd23a5d3_0    conda-forge
decorator                 5.1.1              pyhd8ed1ab_0    conda-forge
defusedxml                0.7.1              pyhd8ed1ab_0    conda-forge
entrypoints               0.4                pyhd8ed1ab_0    conda-forge
expat                     2.5.0                hcb278e6_1    conda-forge
flit-core                 3.7.1              pyhd8ed1ab_0    conda-forge
fontconfig                2.14.2               h14ed4e7_0    conda-forge
freetype                  2.12.1               hca18f0e_1    conda-forge
fribidi                   1.0.10               h36c2ea0_0    conda-forge
frozenlist                1.3.3                    pypi_0    pypi
gcc_impl_linux-64         11.2.0               h1234567_1    defaults
gcc_linux-64              11.2.0               h5c386dc_0    defaults
gfortran_impl_linux-64    11.2.0               h1234567_1    defaults
gfortran_linux-64         11.2.0               hc2dff05_0    defaults
glib                      2.69.1               he621ea3_2    defaults
graphite2                 1.3.14               h295c915_1    defaults
greenlet                  1.1.3            py37hd23a5d3_0    conda-forge
gxx_impl_linux-64         11.2.0               h1234567_1    defaults
gxx_linux-64              11.2.0               hc2dff05_0    defaults
harfbuzz                  4.3.0                hf52aaf7_1    defaults
icu                       58.2              hf484d3e_1000    conda-forge
idna                      3.4                pyhd8ed1ab_0    conda-forge
importlib-metadata        4.11.4           py37h89c1867_0    conda-forge
importlib_resources       5.10.0             pyhd8ed1ab_0    conda-forge
ipykernel                 6.16.0             pyh210e3f2_0    conda-forge
ipython                   7.33.0           py37h89c1867_0    conda-forge
ipython_genutils          0.2.0                      py_1    conda-forge
ipywidgets                8.0.2              pyhd8ed1ab_1    conda-forge
jedi                      0.18.1             pyhd8ed1ab_2    conda-forge
jinja2                    3.1.2              pyhd8ed1ab_1    conda-forge
jpeg                      9e                   h0b41bf4_3    conda-forge
json5                     0.9.5              pyh9f0ad1d_0    conda-forge
jsonschema                4.16.0             pyhd8ed1ab_0    conda-forge
jupyter-offlinenotebook   0.2.2              pyh1d7be83_0    conda-forge
jupyter-resource-usage    0.6.3              pyhd8ed1ab_0    conda-forge
jupyter-rsession-proxy    2.0.1                    pypi_0    pypi
jupyter-server-proxy      3.2.2                    pypi_0    pypi
jupyter-shiny-proxy       1.1                      pypi_0    pypi
jupyter_client            7.4.2              pyhd8ed1ab_0    conda-forge
jupyter_core              4.11.1           py37h89c1867_0    conda-forge
jupyter_server            1.21.0             pyhd8ed1ab_0    conda-forge
jupyter_telemetry         0.1.0              pyhd8ed1ab_1    conda-forge
jupyterhub-base           1.5.0            py37h89c1867_1    conda-forge
jupyterhub-singleuser     1.5.0            py37h89c1867_1    conda-forge
jupyterlab                3.4.8              pyhd8ed1ab_0    conda-forge
jupyterlab_pygments       0.2.2              pyhd8ed1ab_0    conda-forge
jupyterlab_server         2.15.2             pyhd8ed1ab_0    conda-forge
jupyterlab_widgets        3.0.3              pyhd8ed1ab_0    conda-forge
kernel-headers_linux-64   2.6.32              he073ed8_15    conda-forge
keyutils                  1.6.1                h166bdaf_0    conda-forge
krb5                      1.19.3               h3790be6_0    conda-forge
ld_impl_linux-64          2.38                 h1181459_1    defaults
lerc                      4.0.0                h27087fc_0    conda-forge
libblas                   3.9.0           16_linux64_openblas    conda-forge
libcblas                  3.9.0           16_linux64_openblas    conda-forge
libcurl                   7.87.0               h91b91d3_0    defaults
libdeflate                1.17                 h0b41bf4_0    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 h516909a_1    conda-forge
libexpat                  2.5.0                hcb278e6_1    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libgcc                    7.2.0                h69d50b8_2    conda-forge
libgcc-devel_linux-64     11.2.0               h1234567_1    defaults
libgcc-ng                 12.1.0              h8d9b700_16    conda-forge
libgfortran-ng            11.2.0               h00389a5_1    defaults
libgfortran5              11.2.0               h1234567_1    defaults
libgomp                   12.1.0              h8d9b700_16    conda-forge
liblapack                 3.9.0           16_linux64_openblas    conda-forge
liblapacke                3.9.0           16_linux64_openblas    conda-forge
libnghttp2                1.47.0               hdcd2b5c_1    conda-forge
libnsl                    2.0.0                h7f98852_0    conda-forge
libopenblas               0.3.21          pthreads_h78a6416_3    conda-forge
libpng                    1.6.39               h753d276_0    conda-forge
libsodium                 1.0.18               h36c2ea0_1    conda-forge
libsqlite                 3.39.4               h753d276_0    conda-forge
libssh2                   1.10.0               haa6b8db_3    conda-forge
libstdcxx-devel_linux-64  11.2.0               h1234567_1    defaults
libstdcxx-ng              12.1.0              ha89aaad_16    conda-forge
libtiff                   4.5.0                h6adf6a1_2    conda-forge
libuuid                   2.38.1               h0b41bf4_0    conda-forge
libuv                     1.44.2               h166bdaf_0    conda-forge
libwebp-base              1.3.0                h0b41bf4_0    conda-forge
libxcb                    1.13              h7f98852_1004    conda-forge
libzlib                   1.2.13               h166bdaf_4    conda-forge
llvm-openmp               16.0.1               h417c0b6_0    conda-forge
make                      4.3                  hd18ef5c_1    conda-forge
mako                      1.2.3              pyhd8ed1ab_0    conda-forge
markupsafe                2.1.1            py37h540881e_1    conda-forge
matplotlib-inline         0.1.6              pyhd8ed1ab_0    conda-forge
mistune                   2.0.4              pyhd8ed1ab_0    conda-forge
multidict                 6.0.4                    pypi_0    pypi
nbclassic                 0.4.6              pyhd8ed1ab_0    conda-forge
nbclient                  0.7.0              pyhd8ed1ab_0    conda-forge
nbconvert                 7.2.1              pyhd8ed1ab_0    conda-forge
nbconvert-core            7.2.1              pyhd8ed1ab_0    conda-forge
nbconvert-pandoc          7.2.1              pyhd8ed1ab_0    conda-forge
nbformat                  5.7.0              pyhd8ed1ab_0    conda-forge
ncurses                   6.3                  h27087fc_1    conda-forge
nest-asyncio              1.5.6              pyhd8ed1ab_0    conda-forge
nodejs                    6.13.1                        0    conda-forge
notebook                  6.4.12             pyha770c72_0    conda-forge
notebook-shim             0.1.0              pyhd8ed1ab_0    conda-forge
nteract_on_jupyter        2.1.3                      py_0    conda-forge
oauthlib                  3.2.1              pyhd8ed1ab_0    conda-forge
openblas                  0.3.21          pthreads_h320a7e8_3    conda-forge
openssl                   1.1.1t               h0b41bf4_0    conda-forge
packaging                 21.3               pyhd8ed1ab_0    conda-forge
pamela                    1.0.0                      py_0    conda-forge
pandoc                    2.19.2               ha770c72_0    conda-forge
pandocfilters             1.5.0              pyhd8ed1ab_0    conda-forge
pango                     1.50.7               h05da053_0    defaults
parso                     0.8.3              pyhd8ed1ab_0    conda-forge
pcre                      8.45                 h9c3ff4c_0    conda-forge
pcre2                     10.37                hc3806b6_1    conda-forge
pexpect                   4.8.0              pyh9f0ad1d_2    conda-forge
pickleshare               0.7.5                   py_1003    conda-forge
pip                       22.2.2             pyhd8ed1ab_0    conda-forge
pixman                    0.38.0            h516909a_1003    conda-forge
pkgutil-resolve-name      1.3.10             pyhd8ed1ab_0    conda-forge
prometheus_client         0.14.1             pyhd8ed1ab_0    conda-forge
prompt-toolkit            3.0.31             pyha770c72_0    conda-forge
psutil                    5.9.2            py37h540881e_0    conda-forge
pthread-stubs             0.4               h36c2ea0_1001    conda-forge
ptyprocess                0.7.0              pyhd3deb0d_0    conda-forge
pycparser                 2.21               pyhd8ed1ab_0    conda-forge
pycurl                    7.45.1           py37haaec8a5_2    conda-forge
pygments                  2.13.0             pyhd8ed1ab_0    conda-forge
pyjwt                     2.5.0              pyhd8ed1ab_0    conda-forge
pyopenssl                 22.1.0             pyhd8ed1ab_0    conda-forge
pyparsing                 3.0.9              pyhd8ed1ab_0    conda-forge
pyrsistent                0.18.1           py37h540881e_1    conda-forge
pysocks                   1.7.1            py37h89c1867_5    conda-forge
python                    3.7.12          hb7a2778_100_cpython    conda-forge
python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
python-fastjsonschema     2.16.2             pyhd8ed1ab_0    conda-forge
python-json-logger        2.0.1              pyh9f0ad1d_0    conda-forge
python_abi                3.7                     2_cp37m    conda-forge
pytz                      2022.4             pyhd8ed1ab_0    conda-forge
pyzmq                     24.0.1           py37h0c0c2a8_0    conda-forge
r-askpass                 1.1               r42h06615bd_3    conda-forge
r-base                    4.2.0                h1ae530e_0    defaults
r-base64enc               0.1_3           r42h06615bd_1005    conda-forge
r-bslib                   0.4.2             r42hc72bb7e_0    conda-forge
r-cachem                  1.0.7             r42h133d619_0    conda-forge
r-cli                     3.6.1             r42h38f115c_0    conda-forge
r-curl                    4.3.3             r42h06615bd_1    conda-forge
r-digest                  0.6.31            r42h38f115c_0    conda-forge
r-ellipsis                0.3.2             r42h06615bd_1    conda-forge
r-evaluate                0.20              r42hc72bb7e_0    conda-forge
r-fastmap                 1.1.1             r42h38f115c_0    conda-forge
r-fontawesome             0.5.0             r42hc72bb7e_0    conda-forge
r-fs                      1.6.1             r42h38f115c_0    conda-forge
r-glue                    1.6.2             r42h06615bd_1    conda-forge
r-highr                   0.10              r42hc72bb7e_0    conda-forge
r-htmltools               0.5.5             r42h38f115c_0    conda-forge
r-jquerylib               0.1.4             r42hc72bb7e_1    conda-forge
r-jsonlite                1.8.4             r42h133d619_0    conda-forge
r-knitr                   1.42              r42hc72bb7e_1    conda-forge
r-later                   1.3.0             r42h7525677_1    conda-forge
r-lifecycle               1.0.3             r42hc72bb7e_1    conda-forge
r-magrittr                2.0.3             r42h06615bd_1    conda-forge
r-memoise                 2.0.1             r42hc72bb7e_1    conda-forge
r-mime                    0.12              r42h06615bd_1    conda-forge
r-openssl                 2.0.2             r42h76d94ec_0    defaults
r-packrat                 0.9.1             r42hc72bb7e_0    conda-forge
r-processx                3.8.0             r42h06615bd_0    conda-forge
r-ps                      1.7.4             r42h133d619_0    conda-forge
r-quarto                  1.2               r42hc72bb7e_1    conda-forge
r-r6                      2.5.1             r42hc72bb7e_1    conda-forge
r-rappdirs                0.3.3             r42h06615bd_1    conda-forge
r-rcpp                    1.0.10            r42h38f115c_0    conda-forge
r-rlang                   1.1.0             r42h38f115c_0    conda-forge
r-rmarkdown               2.21              r42hc72bb7e_0    conda-forge
r-rsconnect               0.8.29            r42hc72bb7e_0    conda-forge
r-rstudioapi              0.14              r42hc72bb7e_1    conda-forge
r-sass                    0.4.5             r42h38f115c_0    conda-forge
r-stringi                 1.7.6             r42h884c59f_0    defaults
r-stringr                 1.5.0             r42h785f33e_0    conda-forge
r-sys                     3.4.1             r42h06615bd_0    conda-forge
r-tinytex                 0.44              r42hc72bb7e_0    conda-forge
r-vctrs                   0.6.1             r42h38f115c_0    conda-forge
r-xfun                    0.38              r42h38f115c_0    conda-forge
r-yaml                    2.3.7             r42h133d619_0    conda-forge
readline                  8.1.2                h0f457ee_0    conda-forge
requests                  2.28.1             pyhd8ed1ab_1    conda-forge
ruamel.yaml               0.17.21          py37h540881e_1    conda-forge
ruamel.yaml.clib          0.2.6            py37h540881e_1    conda-forge
send2trash                1.8.0              pyhd8ed1ab_0    conda-forge
setuptools                65.4.1             pyhd8ed1ab_0    conda-forge
simpervisor               0.4                      pypi_0    pypi
six                       1.16.0             pyh6c4a22f_0    conda-forge
sniffio                   1.3.0              pyhd8ed1ab_0    conda-forge
soupsieve                 2.3.2.post1        pyhd8ed1ab_0    conda-forge
sqlalchemy                1.4.41           py37h540881e_0    conda-forge
sqlite                    3.39.4               h4ff8645_0    conda-forge
sysroot_linux-64          2.12                he073ed8_15    conda-forge
terminado                 0.16.0             pyh41d4057_0    conda-forge
tinycss2                  1.1.1              pyhd8ed1ab_0    conda-forge
tk                        8.6.12               h27826a3_0    conda-forge
tktable                   2.10                 hb7b940f_3    conda-forge
tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
tornado                   6.2              py37h540881e_0    conda-forge
traitlets                 5.4.0              pyhd8ed1ab_0    conda-forge
typing_extensions         4.4.0              pyha770c72_0    conda-forge
urllib3                   1.26.11            pyhd8ed1ab_0    conda-forge
wcwidth                   0.2.5              pyh9f0ad1d_2    conda-forge
webencodings              0.5.1                      py_1    conda-forge
websocket-client          1.4.1              pyhd8ed1ab_0    conda-forge
wheel                     0.37.1             pyhd8ed1ab_0    conda-forge
widgetsnbextension        4.0.3              pyhd8ed1ab_0    conda-forge
xorg-kbproto              1.0.7             h7f98852_1002    conda-forge
xorg-libice               1.0.10               h7f98852_0    conda-forge
xorg-libsm                1.2.3             hd9c2040_1000    conda-forge
xorg-libx11               1.8.4                h0b41bf4_0    conda-forge
xorg-libxau               1.0.9                h7f98852_0    conda-forge
xorg-libxdmcp             1.1.3                h7f98852_0    conda-forge
xorg-libxext              1.3.4                h0b41bf4_2    conda-forge
xorg-libxrender           0.9.10            h7f98852_1003    conda-forge
xorg-renderproto          0.11.1            h7f98852_1002    conda-forge
xorg-xextproto            7.3.0             h0b41bf4_1003    conda-forge
xorg-xproto               7.0.31            h7f98852_1007    conda-forge
xz                        5.2.6                h166bdaf_0    conda-forge
yarl                      1.8.2                    pypi_0    pypi
zeromq                    4.3.4                h9c3ff4c_1    conda-forge
zipp                      3.9.0              pyhd8ed1ab_0    conda-forge
zlib                      1.2.13               h166bdaf_4    conda-forge
zstd                      1.5.2                h3eb15da_6    conda-forge


### Environment info

```shell
active environment : notebook
    active env location : /srv/conda/envs/notebook
            shell level : 1
       user config file : /home/raniere/.condarc
 populated config files : /srv/conda/.condarc
          conda version : 4.13.0
    conda-build version : not installed
         python version : 3.10.8.final.0
       virtual packages : __linux=5.15.90.1=0
                          __glibc=2.27=0
                          __unix=0=0
                          __archspec=1=x86_64
       base environment : /srv/conda  (writable)
      conda av data dir : /srv/conda/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
                          https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /srv/conda/pkgs
                          /home/raniere/.conda/pkgs
       envs directories : /srv/conda/envs
                          /home/raniere/.conda/envs
               platform : linux-64
             user-agent : conda/4.13.0 requests/2.28.2 CPython/3.10.8 Linux/5.15.90.1-microsoft-standard-WSL2 ubuntu/18.04.6 glibc/2.27
                UID:GID : 1000:1000
             netrc file : None
           offline mode : False

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