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Toolkit for updating the GTDB to the next release and generating data files for the GTDB website.

License: GNU General Public License v3.0

Python 100.00%

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shulp2211

gtdb-release-tk's Issues

Duplicate contigs

Hi, thanks for this nice resource.

After downloading the gtdb_genomes_reps_r95, concatenating with cat *.fna and attempting to build a fasta index fai, I got this warning about duplicate contigs:

I'm guessing some genomes are only contig level ? I will exclude all these anyway, but thought it might be useful to report this.

cheers


gtdb_all_2020_07.fa
drwxrwxr-x  2 rcug rcug      2469888 Mar  5 17:24 gtdb_genomes_reps_r95/
-rw-rw-r--  1 rcug rcug  34548988525 Mar  5 10:35 gtdb_genomes_reps.tar.gz

refbuild2020/gtdb$ [W::fai_insert_index] Ignoring duplicate sequence "contig_1679" at byte offset 33381591175
[W::fai_insert_index] Ignoring duplicate sequence "contig_6943" at byte offset 33386246573
[W::fai_insert_index] Ignoring duplicate sequence "contig_4229" at byte offset 33387111102
[W::fai_insert_index] Ignoring duplicate sequence "contig_130" at byte offset 33387794506
[W::fai_insert_index] Ignoring duplicate sequence "contig_11200" at byte offset 33388335025
[W::fai_insert_index] Ignoring duplicate sequence "contig_4550" at byte offset 33389301667
[W::fai_insert_index] Ignoring duplicate sequence "contig_48143" at byte offset 33390098242
[W::fai_insert_index] Ignoring duplicate sequence "contig_2907" at byte offset 33390525938
[W::fai_insert_index] Ignoring duplicate sequence "contig_378" at byte offset 33390556334
[W::fai_insert_index] Ignoring duplicate sequence "contig_1123" at byte offset 33391031432
[W::fai_insert_index] Ignoring duplicate sequence "contig_101" at byte offset 33391156303
[W::fai_insert_index] Ignoring duplicate sequence "contig_1806" at byte offset 33391891716
[W::fai_insert_index] Ignoring duplicate sequence "contig_1359" at byte offset 33392093996
[W::fai_insert_index] Ignoring duplicate sequence "contig_1822" at byte offset 33392905228
[W::fai_insert_index] Ignoring duplicate sequence "contig_4748" at byte offset 33393360225
[W::fai_insert_index] Ignoring duplicate sequence "contig_91074" at byte offset 33399542556
[W::fai_insert_index] Ignoring duplicate sequence "contig_66939" at byte offset 33399912870
[W::fai_insert_index] Ignoring duplicate sequence "contig_107225" at byte offset 33400100583
[W::fai_insert_index] Ignoring duplicate sequence "contig_15708" at byte offset 33400203255
[W::fai_insert_index] Ignoring duplicate sequence "contig_62616" at byte offset 33401052744
[W::fai_insert_index] Ignoring duplicate sequence "contig_42775" at byte offset 33401183427
[W::fai_insert_index] Ignoring duplicate sequence "contig_60190" at byte offset 33402926417
[W::fai_insert_index] Ignoring duplicate sequence "contig_77394" at byte offset 33402986254
[W::fai_insert_index] Ignoring duplicate sequence "contig_2198" at byte offset 33403633652
[W::fai_insert_index] Ignoring duplicate sequence "contig_15026" at byte offset 33403654892
[W::fai_insert_index] Ignoring duplicate sequence "contig_1601" at byte offset 33403670590
[W::fai_insert_index] Ignoring duplicate sequence "contig_2860" at byte offset 33403706141
[W::fai_insert_index] Ignoring duplicate sequence "contig_158" at byte offset 33403721334
[W::fai_insert_index] Ignoring duplicate sequence "contig_1838" at byte offset 33403767501
[W::fai_insert_index] Ignoring duplicate sequence "contig_6779" at byte offset 33403900528
[W::fai_insert_index] Ignoring duplicate sequence "contig_260" at byte offset 33403925733
[W::fai_insert_index] Ignoring duplicate sequence "contig_196" at byte offset 33404162357
[W::fai_insert_index] Ignoring duplicate sequence "contig_650" at byte offset 33404402048
[W::fai_insert_index] Ignoring duplicate sequence "contig_8610" at byte offset 33404433236
[W::fai_insert_index] Ignoring duplicate sequence "contig_4939" at byte offset 33404513910
[W::fai_insert_index] Ignoring duplicate sequence "contig_3258" at byte offset 33404560708
[W::fai_insert_index] Ignoring duplicate sequence "contig_5634" at byte offset 33404644979
[W::fai_insert_index] Ignoring duplicate sequence "contig_2360" at byte offset 33404674354
[W::fai_insert_index] Ignoring duplicate sequence "contig_4901" at byte offset 33404750338
[W::fai_insert_index] Ignoring duplicate sequence "contig_5072" at byte offset 33404877237
[W::fai_insert_index] Ignoring duplicate sequence "contig_2888" at byte offset 33404888399
[W::fai_insert_index] Ignoring duplicate sequence "contig_1704" at byte offset 33404942557
[W::fai_insert_index] Ignoring duplicate sequence "contig_11188" at byte offset 33405109630
[W::fai_insert_index] Ignoring duplicate sequence "contig_2584" at byte offset 33405200857
[W::fai_insert_index] Ignoring duplicate sequence "contig_2266" at byte offset 33405242063
[W::fai_insert_index] Ignoring duplicate sequence "contig_5210" at byte offset 33405594354
[W::fai_insert_index] Ignoring duplicate sequence "contig_41319" at byte offset 33405670483
[W::fai_insert_index] Ignoring duplicate sequence "contig_74" at byte offset 33408282923
[W::fai_insert_index] Ignoring duplicate sequence "contig_1680" at byte offset 33408348391
[W::fai_insert_index] Ignoring duplicate sequence "contig_72" at byte offset 33408926901
[W::fai_insert_index] Ignoring duplicate sequence "contig_712" at byte offset 33409448977
[W::fai_insert_index] Ignoring duplicate sequence "contig_305" at byte offset 33409559873
[W::fai_insert_index] Ignoring duplicate sequence "contig_8755" at byte offset 33409578952
[W::fai_insert_index] Ignoring duplicate sequence "contig_7476" at byte offset 33409851928
[W::fai_insert_index] Ignoring duplicate sequence "contig_4841" at byte offset 33409934298
[W::fai_insert_index] Ignoring duplicate sequence "contig_8232" at byte offset 33410011908
[W::fai_insert_index] Ignoring duplicate sequence "contig_72661" at byte offset 33410315908
[W::fai_insert_index] Ignoring duplicate sequence "contig_2224" at byte offset 33410354457
[W::fai_insert_index] Ignoring duplicate sequence "contig_305" at byte offset 33410375142
[W::fai_insert_index] Ignoring duplicate sequence "contig_28785" at byte offset 33410398765
[W::fai_insert_index] Ignoring duplicate sequence "contig_10524" at byte offset 33410705170
[W::fai_insert_index] Ignoring duplicate sequence "contig_72797" at byte offset 33410780026
[W::fai_insert_index] Ignoring duplicate sequence "contig_913" at byte offset 33411233301
[W::fai_insert_index] Ignoring duplicate sequence "contig_27130" at byte offset 33411239739
[W::fai_insert_index] Ignoring duplicate sequence "contig_6213" at byte offset 33411952813
[W::fai_insert_index] Ignoring duplicate sequence "contig_11564" at byte offset 33412350514
[W::fai_insert_index] Ignoring duplicate sequence "contig_59381" at byte offset 33412653025
[W::fai_insert_index] Ignoring duplicate sequence "contig_35657" at byte offset 33412828116
[W::fai_insert_index] Ignoring duplicate sequence "contig_5094" at byte offset 33412878478
[W::fai_insert_index] Ignoring duplicate sequence "contig_3031" at byte offset 33413222136
[W::fai_insert_index] Ignoring duplicate sequence "contig_764" at byte offset 33413394072
[W::fai_insert_index] Ignoring duplicate sequence "contig_332" at byte offset 33413461347
[W::fai_insert_index] Ignoring duplicate sequence "contig_9225" at byte offset 33413677292
[W::fai_insert_index] Ignoring duplicate sequence "contig_22791" at byte offset 33413865027
[W::fai_insert_index] Ignoring duplicate sequence "contig_10070" at byte offset 33413972525
[W::fai_insert_index] Ignoring duplicate sequence "contig_16891" at byte offset 33414084945
[W::fai_insert_index] Ignoring duplicate sequence "contig_55911" at byte offset 33414127403
[W::fai_insert_index] Ignoring duplicate sequence "contig_20105" at byte offset 33414348205
[W::fai_insert_index] Ignoring duplicate sequence "contig_32955" at byte offset 33414428744
[W::fai_insert_index] Ignoring duplicate sequence "contig_49227" at byte offset 33414441674
[W::fai_insert_index] Ignoring duplicate sequence "contig_10359" at byte offset 33414814599
[W::fai_insert_index] Ignoring duplicate sequence "contig_2175" at byte offset 33414878135
[W::fai_insert_index] Ignoring duplicate sequence "contig_3512" at byte offset 33414978500
[W::fai_insert_index] Ignoring duplicate sequence "contig_1440" at byte offset 33415168195
[W::fai_insert_index] Ignoring duplicate sequence "contig_839" at byte offset 33415214839
[W::fai_insert_index] Ignoring duplicate sequence "contig_4064" at byte offset 33415279399
[W::fai_insert_index] Ignoring duplicate sequence "contig_2797" at byte offset 33415603055
[W::fai_insert_index] Ignoring duplicate sequence "contig_34157" at byte offset 33415631551
[W::fai_insert_index] Ignoring duplicate sequence "contig_560" at byte offset 33416453105
[W::fai_insert_index] Ignoring duplicate sequence "contig_1680" at byte offset 33418862357
[W::fai_insert_index] Ignoring duplicate sequence "contig_1431" at byte offset 33418867720
[W::fai_insert_index] Ignoring duplicate sequence "contig_13768" at byte offset 33418895279
[W::fai_insert_index] Ignoring duplicate sequence "contig_10493" at byte offset 33419030579
[W::fai_insert_index] Ignoring duplicate sequence "contig_1203" at byte offset 33419049415
[W::fai_insert_index] Ignoring duplicate sequence "contig_16688" at byte offset 33419134419
[W::fai_insert_index] Ignoring duplicate sequence "contig_2026" at byte offset 33419257803
[W::fai_insert_index] Ignoring duplicate sequence "contig_20467" at byte offset 33419277561
[W::fai_insert_index] Ignoring duplicate sequence "contig_8229" at byte offset 33419626068
[W::fai_insert_index] Ignoring duplicate sequence "contig_6249" at byte offset 33419871927
[W::fai_insert_index] Ignoring duplicate sequence "contig_15338" at byte offset 33419982137
[W::fai_insert_index] Ignoring duplicate sequence "contig_1386" at byte offset 33420009831
[W::fai_insert_index] Ignoring duplicate sequence "contig_68604" at byte offset 33420559789
[W::fai_insert_index] Ignoring duplicate sequence "contig_19092" at byte offset 33420609010
[W::fai_insert_index] Ignoring duplicate sequence "contig_74130" at byte offset 33420934870
[W::fai_insert_index] Ignoring duplicate sequence "contig_2491" at byte offset 33421759655
[W::fai_insert_index] Ignoring duplicate sequence "contig_379" at byte offset 33422849528
[W::fai_insert_index] Ignoring duplicate sequence "contig_10649" at byte offset 33422894959
[W::fai_insert_index] Ignoring duplicate sequence "contig_10243" at byte offset 33423198111
[W::fai_insert_index] Ignoring duplicate sequence "contig_16560" at byte offset 33423307470
[W::fai_insert_index] Ignoring duplicate sequence "contig_102922" at byte offset 33423347978
[W::fai_insert_index] Ignoring duplicate sequence "contig_25249" at byte offset 33423395247
[W::fai_insert_index] Ignoring duplicate sequence "contig_1028" at byte offset 33423558254
[W::fai_insert_index] Ignoring duplicate sequence "contig_226" at byte offset 33423893888
[W::fai_insert_index] Ignoring duplicate sequence "contig_9305" at byte offset 33423943360
[W::fai_insert_index] Ignoring duplicate sequence "contig_10868" at byte offset 33424093694
[W::fai_insert_index] Ignoring duplicate sequence "contig_13825" at byte offset 33424210365
[W::fai_insert_index] Ignoring duplicate sequence "contig_13023" at byte offset 33424281882
[W::fai_insert_index] Ignoring duplicate sequence "contig_5833" at byte offset 33425918980
[W::fai_insert_index] Ignoring duplicate sequence "contig_684" at byte offset 33425936244
[W::fai_insert_index] Ignoring duplicate sequence "contig_4492" at byte offset 33426357488
[W::fai_insert_index] Ignoring duplicate sequence "contig_8895" at byte offset 33426671579
[W::fai_insert_index] Ignoring duplicate sequence "contig_7596" at byte offset 33427488902
[W::fai_insert_index] Ignoring duplicate sequence "contig_68640" at byte offset 33427771525
[W::fai_insert_index] Ignoring duplicate sequence "contig_27130" at byte offset 33428042127
[W::fai_insert_index] Ignoring duplicate sequence "contig_3859" at byte offset 33428278164
[W::fai_insert_index] Ignoring duplicate sequence "contig_5859" at byte offset 33428281700
[W::fai_insert_index] Ignoring duplicate sequence "contig_100960" at byte offset 33429783833
[W::fai_insert_index] Ignoring duplicate sequence "contig_20339" at byte offset 33429965877
[W::fai_insert_index] Ignoring duplicate sequence "contig_511" at byte offset 33430243588
[W::fai_insert_index] Ignoring duplicate sequence "contig_33319" at byte offset 33430544595
[W::fai_insert_index] Ignoring duplicate sequence "contig_88735" at byte offset 33431279778
[W::fai_insert_index] Ignoring duplicate sequence "contig_88329" at byte offset 33431340877
[W::fai_insert_index] Ignoring duplicate sequence "contig_54863" at byte offset 33431387649
[W::fai_insert_index] Ignoring duplicate sequence "contig_35610" at byte offset 33432694084
[W::fai_insert_index] Ignoring duplicate sequence "contig_60417" at byte offset 33433038441
[W::fai_insert_index] Ignoring duplicate sequence "contig_986" at byte offset 33433091386
[W::fai_insert_index] Ignoring duplicate sequence "contig_38812" at byte offset 33433313684
[W::fai_insert_index] Ignoring duplicate sequence "contig_37685" at byte offset 33434085165
[W::fai_insert_index] Ignoring duplicate sequence "contig_12211" at byte offset 33434141603
[W::fai_insert_index] Ignoring duplicate sequence "contig_41964" at byte offset 33434374670
[W::fai_insert_index] Ignoring duplicate sequence "contig_2964" at byte offset 33434409259
[W::fai_insert_index] Ignoring duplicate sequence "contig_39990" at byte offset 33434433613
[W::fai_insert_index] Ignoring duplicate sequence "contig_3846" at byte offset 33434452866
[W::fai_insert_index] Ignoring duplicate sequence "contig_3282" at byte offset 33434712053
[W::fai_insert_index] Ignoring duplicate sequence "contig_53391" at byte offset 33434783181
[W::fai_insert_index] Ignoring duplicate sequence "contig_5243" at byte offset 33434949891
[W::fai_insert_index] Ignoring duplicate sequence "contig_4070" at byte offset 33435027790
[W::fai_insert_index] Ignoring duplicate sequence "contig_4476" at byte offset 33435057912
[W::fai_insert_index] Ignoring duplicate sequence "contig_139684" at byte offset 33435842447
[W::fai_insert_index] Ignoring duplicate sequence "contig_49911" at byte offset 33435946656
[W::fai_insert_index] Ignoring duplicate sequence "contig_26859" at byte offset 33436344257
[W::fai_insert_index] Ignoring duplicate sequence "contig_44261" at byte offset 33436538908
[W::fai_insert_index] Ignoring duplicate sequence "contig_26162" at byte offset 33436546648
[W::fai_insert_index] Ignoring duplicate sequence "contig_49743" at byte offset 33436641044
[W::fai_insert_index] Ignoring duplicate sequence "contig_72123" at byte offset 33436810798
[W::fai_insert_index] Ignoring duplicate sequence "contig_124764" at byte offset 33436882330
[W::fai_insert_index] Ignoring duplicate sequence "contig_57830" at byte offset 33436904218
[W::fai_insert_index] Ignoring duplicate sequence "contig_29855" at byte offset 33437357781
[W::fai_insert_index] Ignoring duplicate sequence "contig_89374" at byte offset 33437366849
[W::fai_insert_index] Ignoring duplicate sequence "contig_34758" at byte offset 33437476035
[W::fai_insert_index] Ignoring duplicate sequence "contig_72874" at byte offset 33437566541
[W::fai_insert_index] Ignoring duplicate sequence "contig_32791" at byte offset 33437578194
[W::fai_insert_index] Ignoring duplicate sequence "contig_35547" at byte offset 33437742571
[W::fai_insert_index] Ignoring duplicate sequence "contig_9922" at byte offset 33437963998
[W::fai_insert_index] Ignoring duplicate sequence "contig_35269" at byte offset 33438014813
[W::fai_insert_index] Ignoring duplicate sequence "contig_45490" at byte offset 33438145409
[W::fai_insert_index] Ignoring duplicate sequence "contig_32892" at byte offset 33438182462
[W::fai_insert_index] Ignoring duplicate sequence "contig_78606" at byte offset 33438422894
[W::fai_insert_index] Ignoring duplicate sequence "contig_58362" at byte offset 33438431688
[W::fai_insert_index] Ignoring duplicate sequence "contig_32690" at byte offset 33438478464
[W::fai_insert_index] Ignoring duplicate sequence "contig_128840" at byte offset 33439775288
[W::fai_insert_index] Ignoring duplicate sequence "contig_22791" at byte offset 33440044204
[W::fai_insert_index] Ignoring duplicate sequence "contig_68162" at byte offset 33440069933
[W::fai_insert_index] Ignoring duplicate sequence "contig_12262" at byte offset 33447894055
[W::fai_insert_index] Ignoring duplicate sequence "contig_125609" at byte offset 33447961355
[W::fai_insert_index] Ignoring duplicate sequence "contig_51885" at byte offset 33447967815
[W::fai_insert_index] Ignoring duplicate sequence "contig_1605" at byte offset 33448372310
[W::fai_insert_index] Ignoring duplicate sequence "contig_1669" at byte offset 33448403615
[W::fai_insert_index] Ignoring duplicate sequence "contig_48664" at byte offset 33448646766
[W::fai_insert_index] Ignoring duplicate sequence "contig_27371" at byte offset 33448776345
[W::fai_insert_index] Ignoring duplicate sequence "contig_18248" at byte offset 33448899860
[W::fai_insert_index] Ignoring duplicate sequence "contig_2472" at byte offset 33448978153
[W::fai_insert_index] Ignoring duplicate sequence "contig_5706" at byte offset 33448993892
[W::fai_insert_index] Ignoring duplicate sequence "contig_6890" at byte offset 33449175237
[W::fai_insert_index] Ignoring duplicate sequence "contig_4616" at byte offset 33449199518
[W::fai_insert_index] Ignoring duplicate sequence "contig_51176" at byte offset 33449290062
[W::fai_insert_index] Ignoring duplicate sequence "contig_19257" at byte offset 33449356378
[W::fai_insert_index] Ignoring duplicate sequence "contig_717" at byte offset 33449475712
[W::fai_insert_index] Ignoring duplicate sequence "contig_5379" at byte offset 33449579812
[W::fai_insert_index] Ignoring duplicate sequence "contig_4609" at byte offset 33451429772
[W::fai_insert_index] Ignoring duplicate sequence "contig_2918" at byte offset 33451450316
[W::fai_insert_index] Ignoring duplicate sequence "contig_13485" at byte offset 33451635755
[W::fai_insert_index] Ignoring duplicate sequence "contig_26157" at byte offset 33451775640
[W::fai_insert_index] Ignoring duplicate sequence "contig_53354" at byte offset 33451872758
[W::fai_insert_index] Ignoring duplicate sequence "contig_133277" at byte offset 33451983743
[W::fai_insert_index] Ignoring duplicate sequence "contig_42886" at byte offset 33451986876
[W::fai_insert_index] Ignoring duplicate sequence "contig_58720" at byte offset 33452042971
[W::fai_insert_index] Ignoring duplicate sequence "contig_25952" at byte offset 33452107516
[W::fai_insert_index] Ignoring duplicate sequence "contig_2819" at byte offset 33452397785
[W::fai_insert_index] Ignoring duplicate sequence "contig_2765" at byte offset 33452421322
[W::fai_insert_index] Ignoring duplicate sequence "contig_7491" at byte offset 33452683521
[W::fai_insert_index] Ignoring duplicate sequence "contig_80603" at byte offset 33452830661
[W::fai_insert_index] Ignoring duplicate sequence "contig_26367" at byte offset 33453667013
[W::fai_insert_index] Ignoring duplicate sequence "contig_14801" at byte offset 33453845580
[W::fai_insert_index] Ignoring duplicate sequence "contig_1325" at byte offset 33455725886
[W::fai_insert_index] Ignoring duplicate sequence "contig_86710" at byte offset 33455840212
[W::fai_insert_index] Ignoring duplicate sequence "contig_22089" at byte offset 33456147649
[W::fai_insert_index] Ignoring duplicate sequence "contig_70934" at byte offset 33456290742
[W::fai_insert_index] Ignoring duplicate sequence "contig_38495" at byte offset 33456453957
[W::fai_insert_index] Ignoring duplicate sequence "contig_15454" at byte offset 33458122980
[W::fai_insert_index] Ignoring duplicate sequence "contig_9970" at byte offset 33458196548
[W::fai_insert_index] Ignoring duplicate sequence "contig_19376" at byte offset 33458538252
[W::fai_insert_index] Ignoring duplicate sequence "contig_44955" at byte offset 33458708740
[W::fai_insert_index] Ignoring duplicate sequence "contig_122915" at byte offset 33462055816
[W::fai_insert_index] Ignoring duplicate sequence "contig_211579" at byte offset 33462074953
[W::fai_insert_index] Ignoring duplicate sequence "contig_17791" at byte offset 33462393160
[W::fai_insert_index] Ignoring duplicate sequence "contig_197744" at byte offset 33462600721
[W::fai_insert_index] Ignoring duplicate sequence "contig_322" at byte offset 33462777772
[W::fai_insert_index] Ignoring duplicate sequence "contig_45345" at byte offset 33462948842
[W::fai_insert_index] Ignoring duplicate sequence "contig_27100" at byte offset 33463221340
[W::fai_insert_index] Ignoring duplicate sequence "contig_42164" at byte offset 33463593729
[W::fai_insert_index] Ignoring duplicate sequence "contig_48647" at byte offset 33463723009
[W::fai_insert_index] Ignoring duplicate sequence "contig_84591" at byte offset 33463877536
[W::fai_insert_index] Ignoring duplicate sequence "contig_78889" at byte offset 33464101691
[W::fai_insert_index] Ignoring duplicate sequence "contig_8262" at byte offset 33464333986
[W::fai_insert_index] Ignoring duplicate sequence "contig_62131" at byte offset 33464438014
[W::fai_insert_index] Ignoring duplicate sequence "contig_558" at byte offset 33464656129
[W::fai_insert_index] Ignoring duplicate sequence "contig_4940" at byte offset 33465032757
[W::fai_insert_index] Ignoring duplicate sequence "contig_49673" at byte offset 33465140503
[W::fai_insert_index] Ignoring duplicate sequence "contig_9573" at byte offset 33465249208
[W::fai_insert_index] Ignoring duplicate sequence "contig_2042" at byte offset 33465344216
[W::fai_insert_index] Ignoring duplicate sequence "contig_88026" at byte offset 33465581740
[W::fai_insert_index] Ignoring duplicate sequence "contig_86852" at byte offset 33465926566
[W::fai_insert_index] Ignoring duplicate sequence "contig_50537" at byte offset 33465956489
[W::fai_insert_index] Ignoring duplicate sequence "contig_61382" at byte offset 33466410309
[W::fai_insert_index] Ignoring duplicate sequence "contig_37762" at byte offset 33466989711
[W::fai_insert_index] Ignoring duplicate sequence "contig_106056" at byte offset 33467145360
[W::fai_insert_index] Ignoring duplicate sequence "contig_2191" at byte offset 33467839538
[W::fai_insert_index] Ignoring duplicate sequence "contig_4437" at byte offset 33468160004
[W::fai_insert_index] Ignoring duplicate sequence "contig_10131" at byte offset 33468387662
[W::fai_insert_index] Ignoring duplicate sequence "contig_25303" at byte offset 33468406159
[W::fai_insert_index] Ignoring duplicate sequence "contig_10712" at byte offset 33468860250
[W::fai_insert_index] Ignoring duplicate sequence "contig_9862" at byte offset 33469326023
[W::fai_insert_index] Ignoring duplicate sequence "contig_41273" at byte offset 33469814627
[W::fai_insert_index] Ignoring duplicate sequence "contig_39983" at byte offset 33470100768
[W::fai_insert_index] Ignoring duplicate sequence "contig_103907" at byte offset 33470926345
[W::fai_insert_index] Ignoring duplicate sequence "contig_156933" at byte offset 33471112801
[W::fai_insert_index] Ignoring duplicate sequence "contig_179238" at byte offset 33471405560
[W::fai_insert_index] Ignoring duplicate sequence "contig_39775" at byte offset 33471657898
[W::fai_insert_index] Ignoring duplicate sequence "contig_52596" at byte offset 33471696050
[W::fai_insert_index] Ignoring duplicate sequence "contig_9623" at byte offset 33471728119
[W::fai_insert_index] Ignoring duplicate sequence "contig_32504" at byte offset 33471826168
[W::fai_insert_index] Ignoring duplicate sequence "contig_7609" at byte offset 33471996049
[W::fai_insert_index] Ignoring duplicate sequence "contig_47769" at byte offset 33472266195
[W::fai_insert_index] Ignoring duplicate sequence "contig_9721" at byte offset 33472368987
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