Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy
Home Page: http://imagepy.org
License: BSD 4-Clause "Original" or "Old" License
Hey yxdragon,
ImagePy looks great. I don't know if you're aware of imglib2-imglyb, but that is a native bridge between existing JVM-based ImageJ and ImgLib2 with Python. I believe that you could use this with the existing numpy-based data structures that you have, allowing you to make calls to ImgLib2 and ImageJ2 routines (e.g. from imagej-ops) from ImagePy without having to actually duplicate code. Note that we have regular hackathons (next in US at the end of April) and plenty of us like Python too, so it would be great if you could join in. Some of the imglib2-imglyb folks will probably be there too!
Cheers,
Kyle
macos 10.15.1
Python 3.7.5
after run pip install imagepy install imagepy
then run imagepy' or python -m imagepy` I get an error:
This program needs access to the screen. Please run with a
Framework build of python, and only when you are logged in
on the main display of your Mac.
conda create -n medical python=3.6
conda activate medical
conda install -c conda-forge wxpython
conda install -c conda-forge python.app no need
git clone [email protected]:Image-Py/imagepy.git
conda install -c conda-forge matplotlib
pip install scikit-image
pip install openpyxl
pip install numba ### very important
pip install Shapely
Exception in thread Thread-5: Traceback (most recent call last): File "/home/customer/anaconda3/lib/python3.6/threading.py", line 916, in _bootstrap_inner self.run() File "/home/customer/anaconda3/lib/python3.6/threading.py", line 864, in run self._target(*self._args, **self._kwargs) File "/home/customer/Data/imagepy/imagepy/core/engine/simple.py", line 64, in runasyn self.run(ips, imgs, para) File "/home/customer/Data/imagepy/imagepy/core/util/fileio.py", line 75, in run write2 = write or WriterManager.get(fe[1:], 'imgs') File "/home/customer/Data/imagepy/imagepy/core/manager/iomanager.py", line 50, in get if ext.lower() in cls.writer[tag]: KeyError: 'imgs'
That's a big bug,please fix it ...
imagepy\tools\Draw\magic_tol.py报snap() missing 1 required positional argument: 'lim'错误
The PyCharm IDE is more powerfull than "Develop tool suite -> command line" or the PyAlaCarte. Is it any way to use PyCharm as code editor and the command line while openning ImagePy window to show result images?
1. Incorrect display for 16 uint dicom file
When I load a 4D uint16 grey scale dicom file to the software, it displayed the image with some issues like below:
After converting to 8-bit, it recognizes it as 8-bit RGB.
**2. Cannot display 3D image
Only displayed the first slice of 3D image.
Is it possible to load the 3D image from dicom or video file instead of using the a sequence of 2D images?
Thanks.
A 4-D dicom example (x, y, channel, z):
test_dicom.zip
look like NI vision-development-module,very cool.TKS!
Does it support image formats similar as ImageJ, such as TIFF, GIF, JPEG, PNG, DICOM, BMP, PGM and FITS?
It is important to me because I am building a pathology detection software that reads whole slide images in TIFF, DICOM formats. It would be nice to provide a list of image formats that Imagepy supports. Thanks.
hi, i need help, when i start imagepy by "python -m imagepy", ubuntu16.04 python2.7
Traceback (most recent call last):
File "/usr/lib/python2.7/runpy.py", line 163, in _run_module_as_main
mod_name, _Error)
File "/usr/lib/python2.7/runpy.py", line 111, in _get_module_details
import(mod_name) # Do not catch exceptions initializing package
File "/usr/local/lib/python2.7/dist-packages/imagepy/init.py", line 10, in
from .ui.imagepy import ImagePy
File "/usr/local/lib/python2.7/dist-packages/imagepy/ui/imagepy.py", line 9, in
from .. import IPy, root_dir
File "/usr/local/lib/python2.7/dist-packages/imagepy/IPy.py", line 11, in
from wx.lib.pubsub import pub
File "/usr/local/lib/python2.7/dist-packages/wx/lib/pubsub/init.py", line 38, in
from pubsub import *
File "/usr/local/lib/python2.7/dist-packages/pubsub/pub.py", line 146
def getDefaultPublisher() -> Publisher:
^
SyntaxError: invalid syntax
'self.run(para)
File "C:\Users\XXX\Desktop\ImagePy-64\ImagePy\programs\lib\site-packages\imagepy\menus\File\Import\roi_plg.py", line 30, in run
img[polygon(ls[i]['y'], ls[i]['x'], img.shape)] = int(i)
KeyError: 'y''
Would be good to have some unit tests and regression tests. Also would be good to setup CI. Probably Travis CI for Linux would be a good start. Happy to provide more pointers if needed.
emmm,大佬，我现在想用这个库做3D建模，我想Toolkit3D应该就是这个功能的相关模块吧，我是通过序列导入来吧待建模的图像导入到程序中的，但是每次我调用ToolKit3D的时候他总是提示我需要堆叠的3d图像，emm，我看了一下Image菜单下的内容，不是很懂。所以我想知道怎么样才能得到可供3D重建的stacked3d的图像呢
致敬
I cannot open or extract precompiled binary using 7z on windows.
The lastest version of ImagePy on Linux throws the following error when I open any image:
(__main__.py:330): Gdk-CRITICAL **: 11:41:03.714: IA__gdk_drawable_get_depth: assertion 'GDK_IS_DRAWABLE (drawable)' failed
(__main__.py:330): Gtk-CRITICAL **: 11:41:03.714: IA__gtk_paint_layout: assertion 'style->depth == gdk_drawable_get_depth (window)' failed
show img
Traceback (most recent call last):
File "/home/zoltan/anaconda3/lib/python3.7/site-packages/wx/core.py", line 3259, in <lambda>
lambda event: event.callable(*event.args, **event.kw) )
File "/home/zoltan/anaconda3/lib/python3.7/site-packages/pubsub/core/publisher.py", line 216, in sendMessage
topicObj.publish(**msgData)
File "/home/zoltan/anaconda3/lib/python3.7/site-packages/pubsub/core/topicobj.py", line 452, in publish
self.__sendMessage(msgData, topicObj, msgDataSubset)
File "/home/zoltan/anaconda3/lib/python3.7/site-packages/pubsub/core/topicobj.py", line 482, in __sendMessage
listener(data, self, allData)
File "/home/zoltan/anaconda3/lib/python3.7/site-packages/pubsub/core/listener.py", line 237, in __call__
cb(**kwargs)
File "/home/zoltan/anaconda3/lib/python3.7/site-packages/imagepy/IPy.py", line 72, in showimg
showips(ips)
File "/home/zoltan/anaconda3/lib/python3.7/site-packages/imagepy/IPy.py", line 47, in showips
canvasp = CanvasPanel(curapp.canvasnb)
File "/home/zoltan/anaconda3/lib/python3.7/site-packages/imagepy/ui/canvasframe.py", line 37, in __init__
self.canvas.set_handler(self.set_info)
AttributeError: 'Canvas' object has no attribute 'set_handler'
I went into debugging mode and self.canvas really doesn't have a set_handler method.
我在使用pyinstaller打包imagepy后，点击exe文件闪退，分析原因应该是没有将需要的文件都打包进去，由于imagepy是以插件的形式管理的，我想是不是因为启动时管理器去扫描插件然后再加载插件导致打包不进去
hello,
When loading via File>TIF>TIF Open a 16 bits tiff image, the image is displayed as a 8 bits image modulo 256 (I guess) yielding a nice moiré effect.
ImagePy uses Python-Markdown, which can be extended for maths support using several extensions. I myself tried this one. To enable, you need to append the exts list with 'mdx_math' in the imagepy/ui/mkdownwindow.py file. For instance, markdown("$$x^2$$", extensions=['mdx_math']) results in the HTML code '<p>\n<script type="math/tex; mode=display">x^2</script>\n</p>'. This trick alone is not enough in ImagePy, the documentation writes that some additional steps are needed. Could you implement this? It would be very useful for displaying formulas in help texts.
add fft under the process menus:
menue:
> Process:
> FFT
> Inverse FFT
> --------
> Bandpass Filter
> Highpass Filter
> Lowpass Filter
Noticed that the license is BSD 4-Clause. Was curious if the intent was to have a BSD 4-Clause or simply some BSD license was desired and this one was picked.
If it was the latter, it's worth noting that the advertising clause was deemed problematic by GNU and Berkeley eventually removed it. Usually people wanting a BSD license go with BSD 3-Clause or BSD 2-Clause when picking a BSD license these days to avoid these issues.
If choosing BSD 4-Clause was intentional, would be curious to know why BSD 4-Clause was picked in this case.
Note: IANAL
show img
170822 >>> deleted ips
Traceback (most recent call last):
File "C:\Users\MaiBenBen\Python36\lib\site-packages\wx\core.py", line 3240, in
lambda event: event.callable(*event.args, **event.kw) )
File "C:\Users\MaiBenBen\Python36\lib\site-packages\pubsub\core\publisher.py", line 216, in sendMessage
topicObj.publish(**msgData)
File "C:\Users\MaiBenBen\Python36\lib\site-packages\pubsub\core\topicobj.py", line 452, in publish
self.__sendMessage(msgData, topicObj, msgDataSubset)
File "C:\Users\MaiBenBen\Python36\lib\site-packages\pubsub\core\topicobj.py", line 482, in __sendMessage
listener(data, self, allData)
File "C:\Users\MaiBenBen\Python36\lib\site-packages\pubsub\core\listener.py", line 237, in call
cb(**kwargs)
File "C:\Users\MaiBenBen\Desktop\imagepy-master(2)\imagepy-master\imagepy\IPy.py", line 71, in showimg
ips = ImagePlus(imgs, title)
File "C:\Users\MaiBenBen\Desktop\imagepy-master(2)\imagepy-master\imagepy\core\wraper\imageplus.py", line 32, in init
self.set_imgs(imgs)
File "C:\Users\MaiBenBen\Desktop\imagepy-master(2)\imagepy-master\imagepy\core\wraper\imageplus.py", line 42, in set_imgs
self.height, self.width = self.size = self.imgs[0].shape[:2]
ValueError: not enough values to unpack (expected 2, got 1)
I try to install imagepy with pip and fail because cannot install wxpython-installer. I also do not found it on pypi. Could you update requirements in setup.py file?
大神好：
非常感谢你的工程分享，非常给力。我在使用过程中，出现了一个问题，就是python3 -m imagepy 运行后，点击 file->BMP 或者 file->import 时候，都没有反应。然后无法导入图片进入软件进行分析。大神大致知道是什么原因么？求教了。
Markdown files are not rendered on Linux. The title of the wxwidgets window is shown but not the content. No exception is thrown. I observed that both the LoadURL method
imagepy/imagepy/ui/mkdownwindow.py
Line 54 in c0804fa
imagepy/imagepy/ui/mkdownwindow.py
Line 55 in c0804fa
I am not sure whether it's related but clicking on the icons (Snap, Load, >>, and the user-defined buttons) in a Workflow has no effect, as if the callback was not called. However, the mouse-over works: the documentation box is updated.
We do appreciate your work.
as numba update a lot, many function does not work now.
I want to modify all functions in jit(nopython=True) mode.
But I failed to modify a function (spend two hours)
@jni I think you are aware of numba, can you help to rewrite the function below?
https://github.com/Image-Py/imagepy/blob/master/imagepy/ipyalg/graph/sknw.py
@jit(nopython=True)
def neighbors(shape):
dim = len(shape)
block = np.ones([3]*dim)
block[tuple([1]*dim)] = 0
idx = np.where(block>0)
idx = np.array(idx, dtype=np.uint8).T
idx = np.array(idx-[1]*dim)
acc = np.cumprod((1,)+shape[::-1][:-1])
return np.dot(idx, acc[::-1])in the old version, this function need not jit, but now, if function a call function b and a is a jit function, then b must be jit too.
thanks!
The ImagePy.org website, linked from this repository, seems to be unavailable. There is a DNS error when visiting the link.
3D viewer weird crash on macos
2019-09-16 21:55:39.526 python[18460:3280750] This application is modifying the autolayout engine from a background thread after the engine was accessed from the main thread. This can lead to engine corruption and weird crashes.
2019-09-16 21:55:39.576 python[18460:3280750] *** Assertion failure in -[NSDockConnection sendMessage:], /BuildRoot/Library/Caches/com.apple.xbs/Sources/AppKit/AppKit-1671.60.107/FullScreen.subproj/NSDockConnection.m:227
2019-09-16 21:55:39.594 python[18460:3280750] *** Terminating app due to uncaught exception 'NSInternalInconsistencyException', reason: 'Can only send messages on the main thread'
*** First throw call stack:
(
0 CoreFoundation 0x00007fff481fd2fd __exceptionPreprocess + 256
1 libobjc.A.dylib 0x00007fff728cda17 objc_exception_throw + 48
2 CoreFoundation 0x00007fff48218016 +[NSException raise:format:arguments:] + 98
3 Foundation 0x00007fff4a4b7791 -[NSAssertionHandler handleFailureInMethod:object:file:lineNumber:description:] + 194
4 AppKit 0x00007fff46085c95 -[NSDockConnection sendMessage:] + 248
5 AppKit 0x00007fff45bd0604 NSFullScreenDockConnectionSendTitleForSpace + 126
6 AppKit 0x00007fff45bf687d -[_NSWindowFullScreenContentController setAsThePrincipalFullScreenWindowInSpace] + 77
7 AppKit 0x00007fff45be2993 -[NSWindow(NSWindowTabbing) _doWindowTabOrderAbove:] + 280
8 AppKit 0x00007fff45fcbbd8 -[NSWindowStackController _doWindowOrderingToSwapPriorWindow:withNewWindow:] + 48
9 AppKit 0x00007fff45fcc0d3 __103-[NSWindowStackController _doTabSelectionAndWindowOrderingAtIndex:makeKeyAndOrderFront:justOrderFront:]_block_invoke + 312
10 AppKit 0x00007fff45775990 NSPerformVisuallyAtomicChange + 132
11 AppKit 0x00007fff45fcbe6b -[NSWindowStackController _doTabSelectionAndWindowOrderingAtIndex:makeKeyAndOrderFront:justOrderFront:] + 627
12 AppKit 0x00007fff45fc8782 -[NSWindowStackController setSelectedWindow:] + 333
13 AppKit 0x00007fff4588eddb -[NSWindow(NSWindowTabbing) _doTabbedWindowOrderFront] + 136
14 AppKit 0x00007fff4588ecb5 -[NSApplication _setKeyWindow:] + 222
15 AppKit 0x00007fff4588e776 -[NSWindow _changeKeyAndMainLimitedOK:] + 760
16 AppKit 0x00007fff4588e369 -[NSWindow _makeKeyRegardlessOfVisibility] + 76
17 AppKit 0x00007fff4588df18 -[NSWindow makeKeyAndOrderFront:] + 40
18 libwx_osx_cocoau_core-3.0.0.4.0.dylib 0x000000010b2df7d4 _ZN25wxNonOwnedWindowCocoaImpl5RaiseEv + 36
19 _core.cpython-36m-darwin.so 0x000000010aca0a86 ZL19meth_wxWindow_RaiseP7_objectS0 + 118
20 python 0x000000010a08e678 _PyCFunction_FastCallDict + 200
21 python 0x000000010a1655ef call_function + 143
22 python 0x000000010a16315c _PyEval_EvalFrameDefault + 46796
23 python 0x000000010a1568c9 _PyEval_EvalCodeWithName + 425
24 python 0x000000010a165a5a fast_function + 362
25 python 0x000000010a16564c call_function + 236
26 python 0x000000010a16315c _PyEval_EvalFrameDefault + 46796
27 python 0x000000010a1659ac fast_function + 188
28 python 0x000000010a16564c call_function + 236
29 python 0x000000010a16315c _PyEval_EvalFrameDefault + 46796
30 python 0x000000010a1568c9 _PyEval_EvalCodeWithName + 425
31 python 0x000000010a057b4d function_call + 125
32 python 0x000000010a0144fe PyObject_Call + 62
33 python 0x000000010a163352 _PyEval_EvalFrameDefault + 47298
34 python 0x000000010a1659ac fast_function + 188
35 python 0x000000010a16564c call_function + 236
36 python 0x000000010a16315c _PyEval_EvalFrameDefault + 46796
37 python 0x000000010a1659ac fast_function + 188
38 python 0x000000010a16564c call_function + 236
39 python 0x000000010a16315c _PyEval_EvalFrameDefault + 46796
40 python 0x000000010a1660ff _PyFunction_FastCallDict + 175
41 python 0x000000010a00ceb0 _PyObject_FastCallDict + 320
42 python 0x000000010a0345b8 method_call + 136
43 python 0x000000010a0144fe PyObject_Call + 62
44 python 0x000000010a1d9b6a t_bootstrap + 122
45 libsystem_pthread.dylib 0x00007fff7428f2eb _pthread_body + 126
46 libsystem_pthread.dylib 0x00007fff74292249 _pthread_start + 66
47 libsystem_pthread.dylib 0x00007fff7428e40d thread_start + 13
)
libc++abi.dylib: terminating with uncaught exception of type NSException
/Users/jysjiang/anaconda3/envs/medical/bin/pythonw: line 3: 18460 Abort trap: 6 /Users/jysjiang/anaconda3/envs/medical/python.app/Contents/MacOS/python "$@"
I have tried to install a python plugin by copying the code in the Gaussian filter example and saving in to a .py file in the menu directory or a sub directory but it won’t show in imagepy after I restart it. I have also
Tried editing the init.py files in the directories but this didn’t help.
Hi, I need help when I start image.py by "python -m imagepy", in ubuntu14.04 python2.7 I have the following problem:
caimt @ caimt-desktop ~ / anaconda / pkgs / imagepy-0.17-py_0 / site-packages / imagepy / ui $ python -m imagepy.py
Traceback (most recent call last):
File "/home/caimt/anaconda/lib/python2.7/runpy.py", line 163, in _run_module_as_main
mod_name, _Error)
File "/home/caimt/anaconda/lib/python2.7/runpy.py", line 102, in _get_module_details
loader = get_loader (mod_name)
File "/home/caimt/anaconda/lib/python2.7/pkgutil.py", line 462, in get_loader
return find_loader (fullname)
File "/home/caimt/anaconda/lib/python2.7/pkgutil.py", line 472, in find_loader
for importer in iter_importers (fullname):
File "/home/caimt/anaconda/lib/python2.7/pkgutil.py", line 428, in iter_importers
__import __ (pkg)
File "imagepy.py", line 9, in
from .. import IPy
ValueError: Attempted relative import in non-package
Is there a solution?
Thank you very much.
use pip as a package instead
Win10
Python2.7 or 3.7
get this error on pip install imagepy
updated everything possible but can't figure out why getting this error. Been all over GitHub and every message board found when searching with this error message .
Right before the error there is this: OSError: [WinError 126] The specified module could not be found
Add pip requirements.txt
flake8 testing of https://github.com/Image-Py/imagepy on Python 3.7.1
$ flake8 . --count --select=E901,E999,F821,F822,F823 --show-source --statistics
./imagepy/ui/tablewindow.py:289:10: F821 undefined name 'TableFrame'
tf = TableFrame()
^
./imagepy/ui/mainframe.py:136:43: F821 undefined name 'waui'
self.auimgr.AddPane( self.devpan, waui.AuiPaneInfo() .Bottom() .CaptionVisible( False ).PinButton( True ).Dock()
^
./imagepy/ui/canvas.py:304:24: F821 undefined name 'TestTool'
canvas.set_handler(TestTool())
^
./imagepy/ui/widgets/curvepanel.py:105:28: F821 undefined name 'x1'
self.x1, self.x2 = x1, x2
^
./imagepy/ui/widgets/curvepanel.py:105:32: F821 undefined name 'x2'
self.x1, self.x2 = x1, x2
^
./imagepy/ui/widgets/normal.py:15:68: F821 undefined name 'key'
self.ctrl.Bind(wx.EVT_KEY_UP, lambda x : self.para_changed(key))
^
./imagepy/ui/widgets/cmappanel.py:127:28: F821 undefined name 'x1'
self.x1, self.x2 = x1, x2
^
./imagepy/ui/widgets/cmappanel.py:127:32: F821 undefined name 'x2'
self.x1, self.x2 = x1, x2
^
./imagepy/menus/Plugins/Games/drawstep_plg.py:14:30: F821 undefined name 'ColorManager'
if color == None:color = ColorManager.get_front()
^
./imagepy/menus/Plugins/Games/drawstep_plg.py:21:30: F821 undefined name 'ColorManager'
if color == None:color = ColorManager.get_front()
^
./imagepy/menus/File/open_plg.py:45:11: F821 undefined name 'Plugin'
print(Plugin.title)
^
./imagepy/menus/File/open_plg.py:47:5: F821 undefined name 'Plugin'
Plugin().run() ^
./imagepy/menus/File/GIF/animate_plgs.py:30:10: F821 undefined name 'Image'
imgs = Image.open(para['path'])
^
./imagepy/menus/File/GIF/animate_plgs.py:31:10: F821 undefined name 'ImageSequence'
imgs = ImageSequence.Iterator(imgs)
^
./imagepy/core/manager/languagemanager.py:83:5: F821 undefined name 'ShotcutManager'
ShotcutManager.rm('c')
^
./imagepy/core/manager/languagemanager.py:84:11: F821 undefined name 'ShotcutManager'
print(ShotcutManager.shotcuts)
^
./imagepy/core/manager/languagemanager.py:85:5: F821 undefined name 'ShotcutManager'
ShotcutManager.write()
^
./imagepy/core/engine/mkdown.py:15:8: F821 undefined name 'wx'
app = wx.App()
^
./imagepy/core/engine/mkdown.py:16:2: F821 undefined name 'show_help'
show_help('title', 'abc', '')
^
./imagepy/core/roi/pointroi.py:96:9: F821 undefined name 'Polygon'
p = Polygon(seq)
^
./imagepy/core/roi/pointroi.py:97:10: F821 undefined name 'toSegment'
mp = toSegment(seq) ^
./imagepy/core/myvi/manager.py:275:2: F821 undefined name 'build_surf2d'
build_surf2d(img) ^
./imagepy/tools/Measure/profile_tol.py:159:13: F821 undefined name 'PlotFrame'
frame = PlotFrame(None)
^
23 F821 undefined name 'wx'
23
E901,E999,F821,F822,F823 are the "showstopper" flake8 issues that can halt the runtime with a SyntaxError, NameError, etc. Most other flake8 issues are merely "style violations" -- useful for readability but they do not effect runtime safety.
namename in __all__窗口关闭图片异常。
控制台打印remove， 但是实际上图片并没有关闭。
（windows平台，187e19815c788e49fef551295b62e72674864486版本）
首先非常感谢你分享的这个优秀工具，目前我遇到了一些问题，还没有在本地运行起来
我使用的发行版是Anaconda2 和wxPython，运行命令python main.py遇到了如下错误：
Traceback (most recent call last):
File "main.py", line 4, in <module>
from ui.imagepy import ImagePy
File "C:\apps\imagepy\ui\imagepy.py", line 8, in <module>
import pluginloader, toolsloader, IPy
File "C:\apps\imagepy\ui\pluginloader.py", line 3, in <module>
from core.loader import loader
File "C:\apps\imagepy\core\loader\loader.py", line 7, in <module>
import IPy
File "C:\apps\imagepy\IPy.py", line 8, in <module>
from ui.panelconfig import ParaDialog
File "C:\apps\imagepy\ui\panelconfig.py", line 3, in <module>
from core.managers import WindowsManager, TableLogManager
File "C:\apps\imagepy\core\managers.py", line 12, in <module>
from manager.configmanager import *
File "C:\apps\imagepy\core\manager\configmanager.py", line 34, in <module>
ConfigManager.read()
File "C:\apps\imagepy\core\manager\configmanager.py", line 15, in read
cls.cfg = pickle.load(pkl_file)
File "C:\ProgramData\Anaconda2\lib\pickle.py", line 1384, in load
return Unpickler(file).load()
File "C:\ProgramData\Anaconda2\lib\pickle.py", line 864, in load
dispatch[key](self)
File "C:\ProgramData\Anaconda2\lib\pickle.py", line 972, in load_string
raise ValueError, "insecure string pickle"
ValueError: insecure string pickle
下面是我的环境变量：
['C:\\apps\\imagepy', 'C:\\ProgramData\\Anaconda2\\python27.zip', 'C:\\ProgramData\\Anaconda2\\DLLs', 'C:\\ProgramData\\Anaconda2\\lib', 'C:\\ProgramData\\Anaconda2\\lib\\plat-win', 'C:\\ProgramData\\Anaconda2\\lib\\lib-tk', 'C:\\ProgramData\\Anaconda2', 'C:\\ProgramData\\Anaconda2\\lib\\site-packages', 'C:\\ProgramData\\Anaconda2\\lib\\site-packages\\Sphinx-1.5.1-py2.7.egg', 'C:\\ProgramData\\Anaconda2\\lib\\site-packages\\win32', 'C:\\ProgramData\\Anaconda2\\lib\\site-packages\\win32\\lib', 'C:\\ProgramData\\Anaconda2\\lib\\site-packages\\Pythonwin', 'C:\\ProgramData\\Anaconda2\\lib\\site-packages\\setuptools-27.2.0-py2.7.egg', 'C:\\ProgramData\\Anaconda2\\lib\\site-packages\\wx-3.0-msw']
1. import matplotlib.pyplot as plt
2. import seaborn as sns
3. df_iris = pd.read_csv('../input/iris.csv')
4. fig, axes = plt.subplots(1,2)
5. sns.distplot(df_iris['petal length'], ax = axes[0], kde = True, rug = True) # kde 密度曲线 rug 边际毛毯
6. sns.kdeplot(df_iris['petal length'], ax = axes[1], shade=True) # shade 阴影
7. plt.show()
Dear Sir
我的系统：MacOS
安装方式 pip3 install imagepy
期望您有空可以帮我看一下 谢谢 ！
Building wheel for pystackreg (setup.py) ... error
ERROR: Complete output from command /usr/local/bin/python3.7 -u -c 'import setuptools, tokenize;__file__='"'"'/private/var/folders/49/lx4dfjcs6dn11kb8cmsw5n600000gn/T/pip-install-4mqurchj/pystackreg/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/49/lx4dfjcs6dn11kb8cmsw5n600000gn/T/pip-wheel-d9otnkec --python-tag cp37:
ERROR: running bdist_wheel
running build
running build_py
creating build
creating build/lib.macosx-10.6-intel-3.7
creating build/lib.macosx-10.6-intel-3.7/pystackreg
copying pystackreg/version.py -> build/lib.macosx-10.6-intel-3.7/pystackreg
copying pystackreg/__init__.py -> build/lib.macosx-10.6-intel-3.7/pystackreg
copying pystackreg/pystackreg.py -> build/lib.macosx-10.6-intel-3.7/pystackreg
running build_ext
building 'pystackreg.turboreg' extension
Warning: Can't read registry to find the necessary compiler setting
Make sure that Python modules winreg, win32api or win32con are installed.
C compiler: gcc -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch i386 -arch x86_64 -g
creating build/temp.macosx-10.6-intel-3.7
creating build/temp.macosx-10.6-intel-3.7/src
compile options: '-Iinc/ -I/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c'
extra options: '-std=c++11'
gcc: src/pymain.cpp
gcc: src/TurboReg.cpp
gcc: src/TurboRegMask.cppgcc: src/TurboRegImage.cpp
In file included from src/pymain.cpp:11:
In file included from /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
src/pymain.cpp:207:29: error: non-constant-expression cannot be narrowed from type 'unsigned int' to 'npy_intp' (aka 'long') in initializer list [-Wc++11-narrowing]
npy_intp dims_mat[2] = {rm.mat.nrows(), rm.mat.ncols()};
^~~~~~~~~~~~~~
src/pymain.cpp:207:29: note: insert an explicit cast to silence this issue
npy_intp dims_mat[2] = {rm.mat.nrows(), rm.mat.ncols()};
^~~~~~~~~~~~~~
static_cast<npy_intp>( )
src/pymain.cpp:207:45: error: non-constant-expression cannot be narrowed from type 'unsigned int' to 'npy_intp' (aka 'long') in initializer list [-Wc++11-narrowing]
npy_intp dims_mat[2] = {rm.mat.nrows(), rm.mat.ncols()};
^~~~~~~~~~~~~~
src/pymain.cpp:207:45: note: insert an explicit cast to silence this issue
npy_intp dims_mat[2] = {rm.mat.nrows(), rm.mat.ncols()};
^~~~~~~~~~~~~~
static_cast<npy_intp>( )
src/pymain.cpp:208:29: error: non-constant-expression cannot be narrowed from type 'unsigned int' to 'npy_intp' (aka 'long') in initializer list [-Wc++11-narrowing]
npy_intp dims_pts[2] = {rm.refPts.nrows(), rm.refPts.ncols()};
^~~~~~~~~~~~~~~~~
src/pymain.cpp:208:29: note: insert an explicit cast to silence this issue
npy_intp dims_pts[2] = {rm.refPts.nrows(), rm.refPts.ncols()};
^~~~~~~~~~~~~~~~~
static_cast<npy_intp>( )
src/pymain.cpp:208:48: error: non-constant-expression cannot be narrowed from type 'unsigned int' to 'npy_intp' (aka 'long') in initializer list [-Wc++11-narrowing]
npy_intp dims_pts[2] = {rm.refPts.nrows(), rm.refPts.ncols()};
^~~~~~~~~~~~~~~~~
src/pymain.cpp:208:48: note: insert an explicit cast to silence this issue
npy_intp dims_pts[2] = {rm.refPts.nrows(), rm.refPts.ncols()};
^~~~~~~~~~~~~~~~~
static_cast<npy_intp>( )
1 warning and 4 errors generated.
gcc: src/TurboRegTransform.cpp
src/TurboRegTransform.cpp:45:9: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma warning(disable:4996)
^
gcc: src/TurboRegPointHandler.cpp
1 warning generated.
src/TurboRegTransform.cpp:45:9: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma warning(disable:4996)
^
1 warning generated.
error: Command "gcc -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch i386 -arch x86_64 -g -Iinc/ -I/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c src/pymain.cpp -o build/temp.macosx-10.6-intel-3.7/src/pymain.o -std=c++11" failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for pystackreg
Running setup.py clean for pystackreg
Failed to build pystackreg
Installing collected packages: pystackreg, et-xmlfile, jdcal, openpyxl, xlwt, xlrd, llvmlite, numba, imagepy
Running setup.py install for pystackreg ... error
ERROR: Complete output from command /usr/local/bin/python3.7 -u -c 'import setuptools, tokenize;__file__='"'"'/private/var/folders/49/lx4dfjcs6dn11kb8cmsw5n600000gn/T/pip-install-4mqurchj/pystackreg/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/49/lx4dfjcs6dn11kb8cmsw5n600000gn/T/pip-record-l5_w4xrs/install-record.txt --single-version-externally-managed --compile:
ERROR: running install
running build
running build_py
creating build
creating build/lib.macosx-10.6-intel-3.7
creating build/lib.macosx-10.6-intel-3.7/pystackreg
copying pystackreg/version.py -> build/lib.macosx-10.6-intel-3.7/pystackreg
copying pystackreg/__init__.py -> build/lib.macosx-10.6-intel-3.7/pystackreg
copying pystackreg/pystackreg.py -> build/lib.macosx-10.6-intel-3.7/pystackreg
running build_ext
building 'pystackreg.turboreg' extension
Warning: Can't read registry to find the necessary compiler setting
Make sure that Python modules winreg, win32api or win32con are installed.
C compiler: gcc -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch i386 -arch x86_64 -g
creating build/temp.macosx-10.6-intel-3.7
creating build/temp.macosx-10.6-intel-3.7/src
compile options: '-Iinc/ -I/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c'
extra options: '-std=c++11'
gcc: src/TurboReg.cpp
gcc: src/pymain.cpp
gcc: src/TurboRegMask.cpp
gcc: src/TurboRegImage.cpp
In file included from src/pymain.cpp:11:
In file included from /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
src/pymain.cpp:207:29: error: non-constant-expression cannot be narrowed from type 'unsigned int' to 'npy_intp' (aka 'long') in initializer list [-Wc++11-narrowing]
npy_intp dims_mat[2] = {rm.mat.nrows(), rm.mat.ncols()};
^~~~~~~~~~~~~~
src/pymain.cpp:207:29: note: insert an explicit cast to silence this issue
npy_intp dims_mat[2] = {rm.mat.nrows(), rm.mat.ncols()};
^~~~~~~~~~~~~~
static_cast<npy_intp>( )
src/pymain.cpp:207:45: error: non-constant-expression cannot be narrowed from type 'unsigned int' to 'npy_intp' (aka 'long') in initializer list [-Wc++11-narrowing]
npy_intp dims_mat[2] = {rm.mat.nrows(), rm.mat.ncols()};
^~~~~~~~~~~~~~
src/pymain.cpp:207:45: note: insert an explicit cast to silence this issue
npy_intp dims_mat[2] = {rm.mat.nrows(), rm.mat.ncols()};
^~~~~~~~~~~~~~
static_cast<npy_intp>( )
src/pymain.cpp:208:29: error: non-constant-expression cannot be narrowed from type 'unsigned int' to 'npy_intp' (aka 'long') in initializer list [-Wc++11-narrowing]
npy_intp dims_pts[2] = {rm.refPts.nrows(), rm.refPts.ncols()};
^~~~~~~~~~~~~~~~~
src/pymain.cpp:208:29: note: insert an explicit cast to silence this issue
npy_intp dims_pts[2] = {rm.refPts.nrows(), rm.refPts.ncols()};
^~~~~~~~~~~~~~~~~
static_cast<npy_intp>( )
src/pymain.cpp:208:48: error: non-constant-expression cannot be narrowed from type 'unsigned int' to 'npy_intp' (aka 'long') in initializer list [-Wc++11-narrowing]
npy_intp dims_pts[2] = {rm.refPts.nrows(), rm.refPts.ncols()};
^~~~~~~~~~~~~~~~~
src/pymain.cpp:208:48: note: insert an explicit cast to silence this issue
npy_intp dims_pts[2] = {rm.refPts.nrows(), rm.refPts.ncols()};
^~~~~~~~~~~~~~~~~
static_cast<npy_intp>( )
1 warning and 4 errors generated.
gcc: src/TurboRegTransform.cpp
src/TurboRegTransform.cpp:45:9: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma warning(disable:4996)
^
gcc: src/TurboRegPointHandler.cpp
1 warning generated.
src/TurboRegTransform.cpp:45:9: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma warning(disable:4996)
^
1 warning generated.
error: Command "gcc -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch i386 -arch x86_64 -g -Iinc/ -I/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c src/pymain.cpp -o build/temp.macosx-10.6-intel-3.7/src/pymain.o -std=c++11" failed with exit status 1
----------------------------------------
ERROR: Command "/usr/local/bin/python3.7 -u -c 'import setuptools, tokenize;__file__='"'"'/private/var/folders/49/lx4dfjcs6dn11kb8cmsw5n600000gn/T/pip-install-4mqurchj/pystackreg/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/49/lx4dfjcs6dn11kb8cmsw5n600000gn/T/pip-record-l5_w4xrs/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/var/folders/49/lx4dfjcs6dn11kb8cmsw5n600000gn/T/pip-install-4mqurchj/pystackreg/
WARNING: You are using pip version 19.1.1, however version 19.2.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
StephenFangdeMacBook-Pro:ImagePy stephenfang$ pip3 install imagepy
Collecting imagepy
Collecting pystackreg (from imagepy)
Using cached https://files.pythonhosted.org/packages/24/60/d845d03364bcb77c4d468c705622061fb4409b773830e01845793ce40d7d/pystackreg-0.2.1.tar.gz
Requirement already satisfied: pydicom in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from imagepy) (1.3.0)
Requirement already satisfied: wxpython in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from imagepy) (4.0.6)
Requirement already satisfied: pypubsub in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from imagepy) (4.0.3)
Requirement already satisfied: pandas in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from imagepy) (0.24.2)
Collecting openpyxl (from imagepy)
Requirement already satisfied: scikit-image in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from imagepy) (0.15.0)
Requirement already satisfied: numpy-stl in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from imagepy) (2.10.1)
Requirement already satisfied: read-roi in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from imagepy) (1.5.2)
Collecting numba (from imagepy)
Using cached https://files.pythonhosted.org/packages/bb/0d/db1d84ec79b223dedb72d7f1823a77797494348fea4b1809d92affea720a/numba-0.45.1-cp37-cp37m-macosx_10_9_x86_64.whl
Collecting xlrd (from imagepy)
Using cached https://files.pythonhosted.org/packages/b0/16/63576a1a001752e34bf8ea62e367997530dc553b689356b9879339cf45a4/xlrd-1.2.0-py2.py3-none-any.whl
Requirement already satisfied: shapely in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from imagepy) (1.6.4.post2)
Collecting xlwt (from imagepy)
Using cached https://files.pythonhosted.org/packages/44/48/def306413b25c3d01753603b1a222a011b8621aed27cd7f89cbc27e6b0f4/xlwt-1.3.0-py2.py3-none-any.whl
Requirement already satisfied: markdown in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from imagepy) (3.1)
Requirement already satisfied: numpy in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from pystackreg->imagepy) (1.16.2)
Requirement already satisfied: tqdm in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from pystackreg->imagepy) (4.31.1)
Requirement already satisfied: six in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from wxpython->imagepy) (1.12.0)
Requirement already satisfied: pillow in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from wxpython->imagepy) (6.0.0)
Requirement already satisfied: pytz>=2011k in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from pandas->imagepy) (2019.1)
Requirement already satisfied: python-dateutil>=2.5.0 in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from pandas->imagepy) (2.8.0)
Collecting et-xmlfile (from openpyxl->imagepy)
Collecting jdcal (from openpyxl->imagepy)
Using cached https://files.pythonhosted.org/packages/f0/da/572cbc0bc582390480bbd7c4e93d14dc46079778ed915b505dc494b37c57/jdcal-1.4.1-py2.py3-none-any.whl
Requirement already satisfied: imageio>=2.0.1 in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from scikit-image->imagepy) (2.5.0)
Requirement already satisfied: networkx>=2.0 in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from scikit-image->imagepy) (2.3)
Requirement already satisfied: scipy>=0.17.0 in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from scikit-image->imagepy) (1.2.1)
Requirement already satisfied: PyWavelets>=0.4.0 in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from scikit-image->imagepy) (1.0.3)
Requirement already satisfied: matplotlib!=3.0.0,>=2.0.0 in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from scikit-image->imagepy) (3.0.3)
Requirement already satisfied: python-utils>=1.6.2 in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from numpy-stl->imagepy) (2.3.0)
Collecting llvmlite>=0.29.0dev0 (from numba->imagepy)
Using cached https://files.pythonhosted.org/packages/d7/45/9216cdbf71b94ae8eefe24cfbdf4c1b9045a58f297c6e2eab5cb8d05faf3/llvmlite-0.29.0-cp37-cp37m-macosx_10_9_x86_64.whl
Requirement already satisfied: setuptools>=36 in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from markdown->imagepy) (40.8.0)
Requirement already satisfied: decorator>=4.3.0 in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from networkx>=2.0->scikit-image->imagepy) (4.4.0)
Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from matplotlib!=3.0.0,>=2.0.0->scikit-image->imagepy) (2.4.0)
Requirement already satisfied: kiwisolver>=1.0.1 in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from matplotlib!=3.0.0,>=2.0.0->scikit-image->imagepy) (1.0.1)
Requirement already satisfied: cycler>=0.10 in /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages (from matplotlib!=3.0.0,>=2.0.0->scikit-image->imagepy) (0.10.0)
Building wheels for collected packages: pystackreg
Building wheel for pystackreg (setup.py) ... error
ERROR: Complete output from command /usr/local/bin/python3.7 -u -c 'import setuptools, tokenize;__file__='"'"'/private/var/folders/49/lx4dfjcs6dn11kb8cmsw5n600000gn/T/pip-install-2w_prpxg/pystackreg/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/49/lx4dfjcs6dn11kb8cmsw5n600000gn/T/pip-wheel-0ivmq7zr --python-tag cp37:
ERROR: running bdist_wheel
running build
running build_py
creating build
creating build/lib.macosx-10.6-intel-3.7
creating build/lib.macosx-10.6-intel-3.7/pystackreg
copying pystackreg/version.py -> build/lib.macosx-10.6-intel-3.7/pystackreg
copying pystackreg/__init__.py -> build/lib.macosx-10.6-intel-3.7/pystackreg
copying pystackreg/pystackreg.py -> build/lib.macosx-10.6-intel-3.7/pystackreg
running build_ext
building 'pystackreg.turboreg' extension
Warning: Can't read registry to find the necessary compiler setting
Make sure that Python modules winreg, win32api or win32con are installed.
C compiler: gcc -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch i386 -arch x86_64 -g
creating build/temp.macosx-10.6-intel-3.7
creating build/temp.macosx-10.6-intel-3.7/src
compile options: '-Iinc/ -I/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c'
extra options: '-std=c++11'
gcc: src/pymain.cpp
gcc: src/TurboReg.cpp
gcc: src/TurboRegMask.cppgcc: src/TurboRegImage.cpp
In file included from src/pymain.cpp:11:
In file included from /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
src/pymain.cpp:207:29: error: non-constant-expression cannot be narrowed from type 'unsigned int' to 'npy_intp' (aka 'long') in initializer list [-Wc++11-narrowing]
npy_intp dims_mat[2] = {rm.mat.nrows(), rm.mat.ncols()};
^~~~~~~~~~~~~~
src/pymain.cpp:207:29: note: insert an explicit cast to silence this issue
npy_intp dims_mat[2] = {rm.mat.nrows(), rm.mat.ncols()};
^~~~~~~~~~~~~~
static_cast<npy_intp>( )
src/pymain.cpp:207:45: error: non-constant-expression cannot be narrowed from type 'unsigned int' to 'npy_intp' (aka 'long') in initializer list [-Wc++11-narrowing]
npy_intp dims_mat[2] = {rm.mat.nrows(), rm.mat.ncols()};
^~~~~~~~~~~~~~
src/pymain.cpp:207:45: note: insert an explicit cast to silence this issue
npy_intp dims_mat[2] = {rm.mat.nrows(), rm.mat.ncols()};
^~~~~~~~~~~~~~
static_cast<npy_intp>( )
src/pymain.cpp:208:29: error: non-constant-expression cannot be narrowed from type 'unsigned int' to 'npy_intp' (aka 'long') in initializer list [-Wc++11-narrowing]
npy_intp dims_pts[2] = {rm.refPts.nrows(), rm.refPts.ncols()};
^~~~~~~~~~~~~~~~~
src/pymain.cpp:208:29: note: insert an explicit cast to silence this issue
npy_intp dims_pts[2] = {rm.refPts.nrows(), rm.refPts.ncols()};
^~~~~~~~~~~~~~~~~
static_cast<npy_intp>( )
src/pymain.cpp:208:48: error: non-constant-expression cannot be narrowed from type 'unsigned int' to 'npy_intp' (aka 'long') in initializer list [-Wc++11-narrowing]
npy_intp dims_pts[2] = {rm.refPts.nrows(), rm.refPts.ncols()};
^~~~~~~~~~~~~~~~~
src/pymain.cpp:208:48: note: insert an explicit cast to silence this issue
npy_intp dims_pts[2] = {rm.refPts.nrows(), rm.refPts.ncols()};
^~~~~~~~~~~~~~~~~
static_cast<npy_intp>( )
1 warning and 4 errors generated.
gcc: src/TurboRegTransform.cpp
src/TurboRegTransform.cpp:45:9: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma warning(disable:4996)
^
gcc: src/TurboRegPointHandler.cpp
1 warning generated.
src/TurboRegTransform.cpp:45:9: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma warning(disable:4996)
^
1 warning generated.
error: Command "gcc -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch i386 -arch x86_64 -g -Iinc/ -I/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c src/pymain.cpp -o build/temp.macosx-10.6-intel-3.7/src/pymain.o -std=c++11" failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for pystackreg
Running setup.py clean for pystackreg
Failed to build pystackreg
Installing collected packages: pystackreg, et-xmlfile, jdcal, openpyxl, llvmlite, numba, xlrd, xlwt, imagepy
Running setup.py install for pystackreg ... error
ERROR: Complete output from command /usr/local/bin/python3.7 -u -c 'import setuptools, tokenize;__file__='"'"'/private/var/folders/49/lx4dfjcs6dn11kb8cmsw5n600000gn/T/pip-install-2w_prpxg/pystackreg/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/49/lx4dfjcs6dn11kb8cmsw5n600000gn/T/pip-record-_odidbgb/install-record.txt --single-version-externally-managed --compile:
ERROR: running install
running build
running build_py
creating build
creating build/lib.macosx-10.6-intel-3.7
creating build/lib.macosx-10.6-intel-3.7/pystackreg
copying pystackreg/version.py -> build/lib.macosx-10.6-intel-3.7/pystackreg
copying pystackreg/__init__.py -> build/lib.macosx-10.6-intel-3.7/pystackreg
copying pystackreg/pystackreg.py -> build/lib.macosx-10.6-intel-3.7/pystackreg
running build_ext
building 'pystackreg.turboreg' extension
Warning: Can't read registry to find the necessary compiler setting
Make sure that Python modules winreg, win32api or win32con are installed.
C compiler: gcc -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch i386 -arch x86_64 -g
creating build/temp.macosx-10.6-intel-3.7
creating build/temp.macosx-10.6-intel-3.7/src
compile options: '-Iinc/ -I/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c'
extra options: '-std=c++11'
gcc: src/pymain.cpp
gcc: src/TurboReg.cpp
gcc: src/TurboRegMask.cpp
gcc: src/TurboRegImage.cpp
In file included from src/pymain.cpp:11:
In file included from /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
src/pymain.cpp:207:29: error: non-constant-expression cannot be narrowed from type 'unsigned int' to 'npy_intp' (aka 'long') in initializer list [-Wc++11-narrowing]
npy_intp dims_mat[2] = {rm.mat.nrows(), rm.mat.ncols()};
^~~~~~~~~~~~~~
src/pymain.cpp:207:29: note: insert an explicit cast to silence this issue
npy_intp dims_mat[2] = {rm.mat.nrows(), rm.mat.ncols()};
^~~~~~~~~~~~~~
static_cast<npy_intp>( )
src/pymain.cpp:207:45: error: non-constant-expression cannot be narrowed from type 'unsigned int' to 'npy_intp' (aka 'long') in initializer list [-Wc++11-narrowing]
npy_intp dims_mat[2] = {rm.mat.nrows(), rm.mat.ncols()};
^~~~~~~~~~~~~~
src/pymain.cpp:207:45: note: insert an explicit cast to silence this issue
npy_intp dims_mat[2] = {rm.mat.nrows(), rm.mat.ncols()};
^~~~~~~~~~~~~~
static_cast<npy_intp>( )
src/pymain.cpp:208:29: error: non-constant-expression cannot be narrowed from type 'unsigned int' to 'npy_intp' (aka 'long') in initializer list [-Wc++11-narrowing]
npy_intp dims_pts[2] = {rm.refPts.nrows(), rm.refPts.ncols()};
^~~~~~~~~~~~~~~~~
src/pymain.cpp:208:29: note: insert an explicit cast to silence this issue
npy_intp dims_pts[2] = {rm.refPts.nrows(), rm.refPts.ncols()};
^~~~~~~~~~~~~~~~~
static_cast<npy_intp>( )
src/pymain.cpp:208:48: error: non-constant-expression cannot be narrowed from type 'unsigned int' to 'npy_intp' (aka 'long') in initializer list [-Wc++11-narrowing]
npy_intp dims_pts[2] = {rm.refPts.nrows(), rm.refPts.ncols()};
^~~~~~~~~~~~~~~~~
src/pymain.cpp:208:48: note: insert an explicit cast to silence this issue
npy_intp dims_pts[2] = {rm.refPts.nrows(), rm.refPts.ncols()};
^~~~~~~~~~~~~~~~~
static_cast<npy_intp>( )
1 warning and 4 errors generated.
gcc: src/TurboRegTransform.cpp
src/TurboRegTransform.cpp:45:9: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma warning(disable:4996)
^
gcc: src/TurboRegPointHandler.cpp
1 warning generated.
src/TurboRegTransform.cpp:45:9: warning: unknown pragma ignored [-Wunknown-pragmas]
#pragma warning(disable:4996)
^
1 warning generated.
error: Command "gcc -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch i386 -arch x86_64 -g -Iinc/ -I/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c src/pymain.cpp -o build/temp.macosx-10.6-intel-3.7/src/pymain.o -std=c++11" failed with exit status 1
----------------------------------------
ERROR: Command "/usr/local/bin/python3.7 -u -c 'import setuptools, tokenize;__file__='"'"'/private/var/folders/49/lx4dfjcs6dn11kb8cmsw5n600000gn/T/pip-install-2w_prpxg/pystackreg/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/49/lx4dfjcs6dn11kb8cmsw5n600000gn/T/pip-record-_odidbgb/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/var/folders/49/lx4dfjcs6dn11kb8cmsw5n600000gn/T/pip-install-2w_prpxg/pystackreg/
Hi, about your fifth example, I was wondering whether I can use a series of different angles jpg or png images to do the 3D reconstruction? If could, how should I do this? Thank you.
Hello and thank you for your app,
Dependencies (requirement.txt) for Imagepy were installed (in a virtual env) in a linux computer.
ImagePy.bat was renamed into ImagePy.sh
when starting, the program meets an interruption:
./ImagePy.sh
/home/jeanpat/App/imagepy-master/imagepy
Traceback (most recent call last):
File "/usr/lib64/python3.6/runpy.py", line 183, in _run_module_as_main
mod_name, mod_spec, code = _get_module_details(mod_name, _Error)
File "/usr/lib64/python3.6/runpy.py", line 142, in _get_module_details
return _get_module_details(pkg_main_name, error)
File "/usr/lib64/python3.6/runpy.py", line 109, in _get_module_details
__import__(pkg_name)
File "/home/jeanpat/App/imagepy-master/imagepy/__init__.py", line 9, in <module>
from .imageplus import ImagePlus
File "/home/jeanpat/App/imagepy-master/imagepy/imageplus.py", line 4, in <module>
from .core.manager import WindowsManager, ColorManager
File "/home/jeanpat/App/imagepy-master/imagepy/core/manager/__init__.py", line 10, in <module>
from .languagemanager import *
File "/home/jeanpat/App/imagepy-master/imagepy/core/manager/languagemanager.py", line 82, in <module>
LanguageManager.read()
File "/home/jeanpat/App/imagepy-master/imagepy/core/manager/languagemanager.py", line 26, in read
for line in pkl_file.readlines():
File "/home/jeanpat/Developpements/VirtualEnvs/venv3/lib/python3.6/codecs.py", line 321, in decode
(result, consumed) = self._buffer_decode(data, self.errors, final)
UnicodeDecodeError: 'utf-8' codec can't decode byte 0xb6 in position 24: invalid start byte
以 pyinstaller 轉成執行檔
執行時產生錯誤信息如下
my system is Ubuntu 19.04, I have tried many versions of wxPython
非常好的一个开源项目，但是我有个小问题想请教您：
如题、
我有很多图片，然后每张照片都需要进行种子的计数，并且计算每个种子的面积。请问如何用您开发的这个进行完成？
谢谢
Hello,
I was wondering about the home page - http://imagepy.org but it seems that there is an issue to access this page:
This site can’t be reached imagepy.org’s server IP address could not be found.
Try:
Checking the connection
Checking the proxy, firewall, and DNS configuration
ERR_NAME_NOT_RESOLVED
I opened kit3d->viewer3d -> ShowViewer 3D with error.
Process finished with exit code -1073740771 (0xC000041D)
I don't know what went wrong.
For the network tool to work with Python 3.7.6, we need some changes:
networkx package version 2.1. Reason: the node attribute no longer exists as of version 2.4 (see here)n to n.astype(np.int16) in lines 45, 46 of module graphpen_tol:
TypeError: 'float' object cannot be interpreted as an integer不能多次撤销
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