Brainrender
!! NOTE: you're looking at brainrender v2.0
We have recently released a new version of brainrender
, version 2.0 (brainrender
.
However, this does mean that code written to work with previous versions of brainrender
will need to be adjusted slightly to work with the newer versions.
If you are transitioning to the new brainrender
version, please reade the guide we have put together about moving from v1.0 to v2.0.
brainrender
is a python package for the visualization of three dimensional neuro-anatomical data. It can be used to render data from publicly available data set (e.g. Allen Brain atlas) as well as user generated experimental data. The goal of brainrender is to facilitate the exploration and dissemination of neuro-anatomical data by providing a user-friendly platform to create high-quality 3D renderings.
Docs
:paper: brainrender paper
Installation
You can install brainrender
with:
pip install brainrender
Contributing
Contributions to brainrender are more than welcome. Please see the contributing guide.
Citing brainrender
If you use brainrender
in your work, please cite:
Claudi, Federico, Adam L. Tyson, and Tiago Branco. 2020. “Brainrender. A Python Based Software for Visualisation of Neuroanatomical and Morphological Data.” Cold Spring Harbor Laboratory. https://doi.org/10.1101/2020.02.23.961748.
Examples
The following images were created for the publication of the brainrender paper. References to the original data being visualised can also be found in the paper.