The velvet from jamestiotio

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This project forked from dzerbino/velvet

Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 18: 821-829

License: GNU General Public License v2.0

Shell 0.09% C++ 5.74% Python 0.59% Perl 3.11% C 78.15% Objective-C 2.05% C# 1.45% Assembly 3.73% Ada 2.32% CLIPS 0.18% Pascal 1.05% TeX 1.31% SAS 0.04% Makefile 0.18%

velvet's Introduction

README.TXT

VELVET SOURCE 
March 28 2008
Daniel Zerbino

NOTE: The PDF manual in this directory contains all the information contained
in this text file, plus much more!

> SUMMARY
	* A/ REQUIREMENTS
	* B/ COMPILING INSTRUCTIONS
	* C/ WHERE IS THE MANUAL?

----------------------------------------------------------------------------------
A/ REQUIREMENTS

	Velvet should function on any standard 64bit Linux environment with
gcc. A good amount of physical memory (12GB to start with, more is no luxury)
is recommended. 

----------------------------------------------------------------------------------
B/ COMPILING INSTRUCTIONS

Normally, with a GNU environment, just type:

> make

For colorspace Velvet replace that command with 

> make color

Otherwise compile each *.c file separately, then execute the default
instructions at the top of Makefile. 

----------------------------------------------------------------------------------
C/ WHERE IS THE MANUAL?

If you cannot find the PDF manual in the source directory (probably because
you downloaded Velvet through git), you can simply compile it:

> make doc

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