Name: Jon Haitz Legarreta Gorroño
Type: User
Company: Brigham and Women's Hospital, Mass General Brigham/Harvard Medical School
Bio: Postdoctoral research fellow interested in diffusion MRI, tractography, deep learning, computational neuroanatomy and reproducible scientific research
Location: Boston, MA, USA
Blog: https://jhlegarreta.github.io/
Jon Haitz Legarreta Gorroño's Projects
Documentation related files for tractoflow
This software implements the clustering method described in D. Wassermann, L. Bloy, E. Kanterakis, R. Verma, and R. Deriche. Unsupervised white matter fiber clustering and tract probability map generation: Applications of a gaussian process framework for white matter fibers. NeuroImage, 51(1):228–241, 2010. If you use it you MUST cite this journal publication.
Tractography learning
Scripts used to recreate the results of the ISMRM 2015 Tractography Challenge
Automatic White Matter Bundle Segmentation
Implementation of the White Matter Query Language and associated tools for dMRI white matter tract extraction and analysis
Uniform Manifold Approximation and Projection
A concise grammar of interactive graphics, built on Vega.
Visualization Toolkit
Visualization Toolkit for the Web
General-purpose features that may be integrated into VTK library in the future.
vtkBioeng is a collection of C++ classes that extend the Visualization Toolkit (VTK). These classes feature collision detection, polydata model editing, and surface hole filling. More classes going public soon...
The VTK examples, formerly hosted on media wiki
Scraped, buildable version of the examples found at http://vtk.org/Wiki/VTK/Examples
The Python Package Index
White matter tractography clustering and more...
Connectome Workbench