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Jon Haitz Legarreta Gorroño's Projects

mdt icon mdt

Microstructure Diffusion Toolbox

metaio icon metaio

MetaImage is the text-based tagged file format for medical images that resulted. We have now extended that file format to support a variety of objects that occur in medicine such a tubes (for vessels, needles, etc.), blobs (for arbitrary shaped objects), cubes, spheres, etc. The complete library is known at MetaIO.

mindboggle icon mindboggle

Automated anatomical brain label/shape analysis software (+ website)

minimal-mistakes icon minimal-mistakes

:triangular_ruler: A flexible two-column Jekyll theme. Perfect for personal sites, blogs, and portfolios hosted on GitHub or your own server.

mittens icon mittens

A Python library for Analytic Tractography

moab_taskman icon moab_taskman

Machine Learning Experiment Manager for HPC (SLURM and Moab)

mrtrix3 icon mrtrix3

MRtrix provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density

multipleimageiterator icon multipleimageiterator

ITK remote module from an IJ article at http://www.insight-journal.org/browse/publication/915

ndmg icon ndmg

NeuroData's MRI Graphs (ndmg) - structural connectome estimation package and pipeline

nextflow icon nextflow

A DSL for data-driven computational pipelines

nibabel icon nibabel

Python package to access a cacophony of neuro-imaging file formats

niftynet icon niftynet

An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy

nilabels icon nilabels

Tools to automatise simple manipulations and measurements of medical images and segmentations in nifti format.

nilearn icon nilearn

Machine learning for NeuroImaging in Python

nipy icon nipy

Neuroimaging in Python FMRI analysis package

nipype icon nipype

Workflows and interfaces for neuroimaging packages

obelisk icon obelisk

MIDL 2018: one binary extremely large and inflecting sparse kernel (pytorch)

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