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jiangchb's Projects

ddrad_tools icon ddrad_tools

My implementation of FRAGMATIC: a tool for optimizing ddRADseq projects

deepcpg icon deepcpg

Deep neural networks for predicting CpG methylation

deepredmt icon deepredmt

Deepred-Mt is a novel method based on deep neural networks to predict C-to-U editing sites in angiosperm mitochondrial RNA.

deeptools icon deeptools

Tools to process and analyze deep sequencing data.

dendropy icon dendropy

A Python library for phylogenetic scripting, simulation, data processing and manipulation.

denovoassembly icon denovoassembly

An implementation of De Bruijn Graph and Euler walk for string assembly problem

dgenies icon dgenies

Dotplot large Genomes in an Interactive, Efficient and Simple way

domino icon domino

Development of molecular markers in non-model organisms

dot icon dot

Dot: An interactive dot plot viewer for comparative genomics

dotplotly icon dotplotly

Generate an interactive dot plot from mummer or minimap alignments

drgge icon drgge

遗传评估报告生成系统

drompaplus icon drompaplus

ChIP-seq pipeline tool for quality check, normalization, statistical analysis, and visualization of multiple ChIP-seq samples.

dupgen_finder icon dupgen_finder

A pipeline used to identify different modes of duplicated gene pairs

earlgrey icon earlgrey

Earl Grey: A fully automated TE curation and annotation pipeline

easycircosscript icon easycircosscript

An easy perl script designed for generate configuration files of Circos plot.

easyreport icon easyreport

A simple and easy to use Web Report System for java.EasyReport是一个简单易用的Web报表工具(支持Hadoop,HBase及各种关系型数据库),它的主要功能是把SQL语句查询出的行列结构转换成HTML表格(Table)，并支持表格的跨行(RowSpan)与跨列(ColSpan)。同时它还支持报表Excel导出、图表显示及固定表头与左边列的功能。

ebwt2indel icon ebwt2indel

ebwt2InDel: find SNPs and InDels from the BWT of a fasta read set

eems icon eems

Estimating Effective Migration Surfaces

endhic icon endhic

EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to assemble large contigs into chromosomal-level scaffolds. EndHiC takes the HiC-pro's bin matrix results as input data.

fasconcat icon fasconcat

FASconCAT is a user-friendly software that concatenates rapidly different kinds of sequence data into one supermatrix file. Output files are either in FASTA, PHYLIP or NEXUS format and are directly loadable in phylogenetic programs like PAUP*, RAxML or MrBayes. FASconCAT can handle FASTA, PHYLIP and CLUSTAL formatted input files in one single run. It provides useful information about each input file and the concatenated supermatrix.

fast-plast icon fast-plast

Automated de novo assembly of whole chloroplast genomes.

fast-pptx icon fast-pptx

Quickly make a PowerPoint presentation from a directory of URLs, images, PDFs, CSV files, and code snippets.

fastdtlmapper icon fastdtlmapper

Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method

fastks icon fastks

Pipeline for generate Ks plots of transcriptome data.

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