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genome_analysis

genome_tools

My own scripts for genome project

genomic_tools

Genomic related tools

genomicpips

for genomic analysis

genomics_general

General tools for genomic analyses.

genomics_scripts_full

Scripts for genomics

genotoolbox

A box of genomics tools

genotype-corrector

A useful tool to correct genotype calls from individuals with the goal to improve genetic mapping

genovi

GenoVi, an automated customizable circular genome visualizer for bacteria and archaea

genvisr

Genome data visualizations

geta

ggstatsplot

Enhancing `{ggplot2}` plots with statistical analysis 📊🎨📣

gibpss

Genotyping toolkit for GBS, two-enzyme GBS, RAD and ddRAD sequence data

gistandard

SandBox轻量级办公管理系统（gistandard乙方版本）

gmata

software GMATA

goenrich

GO enrichment with python -- pandas meets networkx

gp_evotrees

A phylogenetic pipeline for inferring a species/genome tree from a set of genomes by clustering, inferring gene families and their trees

graphlan

High-quality circular representations of taxonomic and phylogenetic trees

gsat

Graph-based Sequence Assembly Toolkit

gtseq-pipeline

A series of perl and python scripts for generating genotypes from NGS fastq files from GTseq library sequencing.

gwidecodeml

A Python package for testing evolutionary hypotheses in genome-wide approaches.

heatmapcluster

A python library for generating a clustered heatmap with dendrograms.

heatmaply

Interactive Heat Maps for R Using plotly

helpful_commands

Command-line tools, commands, and code snippets for performing routine data processing and bioinformatics tasks.

hse

hyphy_analysis

Selection analyses, Evolutionary Hypothesis testing, relative evolutionary rate inference, Coevolutionary analysis, codon selection analyses, compartmentalization, data file tools, miscellaneous, model comparison, molecular clock, phylogeny reconstruction, positive selection, recombination, relative rate, relative ratio

igv-snapshot-automator

Script to automatically create and run IGV snapshot batchscripts

itolapi

Python API for the Interactive Tree of Life (iTOL)

jbrowse

Full-featured and stable genome browser built with JavaScript and HTML5.

jsphylosvg

htmlwidgets for the jsPhyloSVG javascript library