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mindel

a reference genome-independent next-generation tool for cumulative InDel marker discovery

mingpcacluster

A new simple and efficient software to PCA and Cluster For popolation VCF File or STOmics gem File

minimalmarkers

Code for choosing the minimal set of genetic markers needed to differentiate all samples in a genotyping dataset

miniprot

Align proteins to genomes with splicing and frameshift

mito_recombinator

A pipeline used to analyze repeat-mediated recombination for plant mitogenome

mitocirco

A pipeline to analyse mtDNA sequence

mitofinder

MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data

mitoflex

A mitogenome toolkit inspired by MitoZ, while being more effective, precise and flexible.

mitofy

Fork of mitofy for linux web interface

mitofyx

mitogenomics

Multiple statistical and evolutionary analyses on mitogenomes from a given data base or from GenBank. Analyses include complete mitochondrial genomes and its genes.

mitohifi

Find, circularise and annotate mitogenome from PacBio assemblies

mitorna

mitovar

Mitochondrial DNA sequence assembly and annotation for nematodes using NGS data.

mixemt

A tool for phylogenetic interpretation of human mtDNA sequence mixtures

mixmogam

Mixed Model Package For Genome-wide association mapping.

monotremegenome

Custom scripts for monotreme genome project

mtoolbox

A bioinformatics pipeline to analyze mtDNA from NGS data

mtx_model

R package for differential expression analysis in metatranscriptomics

mummer2circos

Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments

mutations_hts_noref

Repository comprising data and analysis about arrange contigs based on allele frequency

mutmap

MutMap pipeline to identify causative mutations responsible for a phenotype

mytaxa

MeTaxa: an advanced taxonomy classifier for unknown genomic and metagenomic sequences

ncbi_search

This script uses NCBI's Entrez Programming Utilities to perform searches of NCBI databases. This script can return either the complete database records, or the IDs of the records.

network

networkdiversity

Calculation of beta diversity over phylogenetic networks.

next

ngenomesyn

Any Way to Show Multi genomic Synteny

ngs

Scripts for next generation sequencing

ngs-protocols

Scripts to run several protocols to process and analyze Next-Generation Sequencing data