Name: Josh Herr
Type: User
Company: University of Nebraska
Bio: I am an Assistant Professor at the University of Nebraska. I study the genomics and metagenomics of plant-microbe interactions with a focus on mycology.
Location: Lincoln, NE, USA
Blog: http://joshuaherr.com
Josh Herr's Projects
Bacterial genomes finishing tool for structural insights on draft genomes
Genomics database manager
The CRISPR assembler
small utilities for manipulating .crispr files
A JavaScript visualization library for HTML and SVG.
Data Carpentry workshop materials
Website for data carpentry
This is an example of git and git hub collaboration
:notebook: Lab manager, experiment notebook, database for research labs
This is my email signature HTML & CSS
EMIRGE reconstructs full length ribosomal genes from short read sequencing data.
A collection of scripts developed to interact with fasta, fastq and sam/bam files.
fluffy-octo-meme is the latest craze in examples
data for class
an example using git and github
Genomic Assemblies Merger for NGS
data for genome annotation
an example of some genome alignment stuff
Genomics Workshop Overview
My lecture on ggplot at Cal (spring 2013)
Teaching materials for the R package ggplot2
Software Carpentry introduction to Git for novices.
The missing package manager for OS X.
a friendly homebrew-style CLI workflow for the administration of Mac applications distributed as binaries
Scientific formulae for the Homebrew package manager
httr: a friendly http package for R
A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).
It's a presentation framework based on the power of CSS3 transforms and transitions in modern browsers and inspired by the idea behind prezi.com.
A reference set of ITS OTUs derived from UNITE for use with QIIME