Name: Josh Herr
Type: User
Company: University of Nebraska
Bio: I am an Assistant Professor at the University of Nebraska. I study the genomics and metagenomics of plant-microbe interactions with a focus on mycology.
Location: Lincoln, NE, USA
Blog: http://joshuaherr.com
jekyll-bootstrap
The quickest way to start and publish your Jekyll powered blog. 100% compatible with GitHub pages.
jekyll-lunr-js-search
Jekyll + lunr.js = static websites with powerful full-text search using JavaScript
jekyll_template
a simple jeckyll template
jmpress.js
A jQuery plugin to build a website on the infinite canvas
jrherr.github.com
Open Notebook
khmer
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
khmer_diversity
Tools to evaluate the diversity of metagenomics sample
knowyourdata-genomics
Lesson on Getting to Know Your Data for genomics
kraken
Kraken taxonomic sequence classification system
kraken-biom
Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/).
lab_page
This is the website of my research laboratory
latex-grant
LaTeX classes for formatting scientific documents, including US federal grant proposals.
libcrispr
A small library for dealing with .crispr files
localblast
A short tutorial on how to run local BLAST.
makefile-example
An example of a data analysis pipeline using Make
metamos
A metagenomic and isolate genome assembly pipeline built with AMOS
metavelvet
An extension of Velvet assembler to de novo metagenome assembly from short sequence reads
meteor-gazelle
A framework built using Meteor.
migaap
My Working Microbial Genome Assembly & Annotation Pipeline
minced
Mining CRISPRs in Environmental Datasets
mix
MIX: Combining multiple assemblies from NGS data
mlst
Scan contig files against PubMLST typing schemes
mobedac-fungi
MOBeDAC Fungi Database
mothur_ami
Repository to create and maintain an Amazon AMI for mothur
nanopore-scripts
Various scripts and recipes for working with nanopore data
notebook
Open Lab Notebook
oligotyping
Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa
oneliners
Useful bash one-liners for bioinformatics.
popbam
POPBAM: Tools for Evolutionary Analysis of Short Read Sequence Alignments
poppin
A tool for bacterial gene assembly.
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
