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Josh Herr's Projects

srst2 icon srst2

Short Read Sequence Typing for Bacterial Pathogens

taxaassign icon taxaassign

Pipeline to annotate sequences at different taxonomic levels using NCBI's taxonomy

taxize icon taxize

Search web taxonomy sites and download data

trimal icon trimal

A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 1.4

velour icon velour

memory efficient short read de novo DNA sequence assembly tool for gigabase genomes

web icon web

Web content for Meren Lab

webgl-globe icon webgl-globe

WebGL Globe is a platform for visualizing latitude longitude based information using WebGL.

wiggletools icon wiggletools

Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency

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