Name: Josh Herr
Type: User
Company: University of Nebraska
Bio: I am an Assistant Professor at the University of Nebraska. I study the genomics and metagenomics of plant-microbe interactions with a focus on mycology.
Location: Lincoln, NE, USA
Blog: http://joshuaherr.com
Josh Herr's Projects
Lesson on using the SQL for ecology
Short Read Sequence Typing for Bacterial Pathogens
Better HTML Starter Templates for Bootstrap 3
Pipeline to annotate sequences at different taxonomic levels using NCBI's taxonomy
Search web taxonomy sites and download data
resources for teaching
Interactive phylogenetic tree viewing software
A demonstration of using bottle with bootstrap for basic web app development
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 1.4
Web based DNA sequence editing and analysis tool
memory efficient short read de novo DNA sequence assembly tool for gigabase genomes
Web content for Meren Lab
WebGL Globe is a platform for visualizing latitude longitude based information using WebGL.
Reads simulator
Wheat Microbiome Project Stuff
Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency
Data Wrangling and Processing for Genomics