Related Issues (20)
- write tests about `assets/misc/neon_nmdc_term_mapping.tsv` divergence from schema HOT 4
- remove legacy methods for retrieving Neon data from 3rd parties
- remove usages of class-sparql in project.Makefile HOT 1
- remove build-datafile-from-api-requests usages and *filtered-request* from project.Makefile
- remove fuseki container shutdown and direct TDB2 writing from project.Makefile
- remove mixs regernation by introspetion
- remove legacy files from `assets/`
- move all Neon mapping files to a single path
- for visualizations, `slot_usages` over object properties should indicate narrowest range
- what to exclude from visualizastion?
- what predicates should be asserted in visualizations, esp for MIxS slots
- has unit appears as a slot for Biosample HOT 4
- has_unit does not appear as a slot for QuantityValue in the online documentation ?
- Split up MetatranscriptomeActivity like metaG was HOT 2
- `napa_compliance` branch: Make `insert_many_pymongo.py` more robust HOT 1
- Deprecate MetagenomeSequencingActivity
- `nmdc.owl` is being generated with URIs like `<https://w3id.org/mixs/depth>` not `<https://w3id.org/mixs/0000018>` HOT 3
- Update Code of conduct with staff feedback
- Update `extract_study` command to search Legacy IDs
- workarround: generate RDF joining element labels to id-based IRIs
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