oicr-gsi Goto Github PK
Name: Genome Sequence Informatics
Type: Organization
Bio: Repositories for OICR's Genome Sequence Informatics team
Location: Toronto, ON
Genome Sequence Informatics's Projects
cerberus
File provenance library
cfmedips-bakeoff-report-infra
Code repo for the OICR bake-off analysis
cfmedipsqc
cfMedipsQC workflow produces a set of metrics files for sequencing data generated in methylation profiling of circulating Free DNA.
cgi_validation_scripts
scripts for clinical validation of new assays
check_barcodes
chord
A WDL implementation of UMCUGenetics CHORD
cnv-analysis
consensuscruncher
ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifers (UMIs) to amalgamate reads derived from the same DNA template into a consensus sequence.
consensuscruncherworkflow
A workflow which combines consensus cruncher and mutect2
cpcgene
Tools for the CPCGene project
cramconverter
a workflow to run bamToCram or cramToBam
cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
crosscheckfingerprints
crosscheckfingerprintscollector
workflow to generate per library fingerprints for use in gatk CrosscheckFingerprints
cuplr
custom-analysis-pipe
This repo is for some custom analysis pipelines
dashi
Python Dash visualization of OICR QC data
data_release
Scripts for releasing data generated at OICR to stakeholders
debarcer
Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes
debarcerworkflow
delly
Delly workflow produces a set of vcf files with different types of structural variant calls
dellygermline
Call germline SVs using Delly
determinephix
Workflow to determine PhiX contamination of undetermined reads
dimsum
QC Tracking dashboard
djerba
Create cancer bioinformatics reports from metadata and workflow output
dnaseqqc
DNASeqQC Pipeline; chains bwaMem, fastQC, and bamQC
downsampling-panel-exomes
dragen-somatic
The Dragen somatic variant calling workflow
drmaaws
A webservice for interacting with DRMAA-based clusters
drumbeat
A SCORe-compatible server for use on local disk where users upload is unmanaged.
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