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Genome Sequence Informatics photo

oicr-gsi Goto Github PK

repos: 226.0 gists: 0.0

Name: Genome Sequence Informatics

Type: Organization

Bio: Repositories for OICR's Genome Sequence Informatics team

Location: Toronto, ON

Genome Sequence Informatics's Projects

fingerprint_maps icon fingerprint_maps

Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of functional genomic data.

freec icon freec

freec workflow - call CNV on your tumor wih optional normal

gridss icon gridss

OICR WDL implementation of GRIDSS PURPLE LINX

gsi-config icon gsi-config

Config files for setting up new developers in GSI

guanyin icon guanyin

Reporting repository and report record keeping

hla-vbseq icon hla-vbseq

workflow wraps HLA-VBSeq, a tool for estimating the most prevalent HLA types in a sample

hlaminer icon hlaminer

wrapper workflow for BCGSC tool HLAminer

hmmcopy icon hmmcopy

Calls Copy Number Variants on sequencing data from cancer patients

hrdetect icon hrdetect

Workflow for the sigtools and HRdetect R packages

ichorcna icon ichorcna

workflow for estimating the fraction of tumour in cell-free DNA from sWGS

indelvalidate icon indelvalidate

workflow for indel validation, based on CGI-Tools/6-indelValidate.sh

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