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starmulti

strelka

Workflow to run Strelka1 for variant calling

strelkasomatic

Strelka2 somatic variant calling workflow

svtools

Tools for processing and analyzing structural variants.

swg-pipe

tape-archiving

Scripts meant to prepare a project for archiving, encrypt it using GPG, verify the output, and then send it to CommVault to write to tape

timetracker

Simple, easy to use, open source time tracking system.

tmbanalysis

A workflow to align fastq reads, call variants, annotate and assess TMB

tomcat-maven-plugin

Mirror of Apache Tomcat Maven plugin

trust4

analysis of antibody diversity, .wdl wrapper workflow

umicollapse

umiCollapse workflow, generating umi deduplicated bam file and stats

umiconsensus

Workflow to generate consensus sequence bases on UMIs using consensusCruncher.

umiextract

workflow to extract UMI from fastq files and place in fastq header

umiqc

QC workflow to assess UMI components

variant-merging

a workflow for combining variant calls from SNV analyses done with different callers

varianteffectpredictor

Variant Effect Predictor Workflow

varscan

varscan repo contains code for Varscan workflow

varscan2

vcf-genotype-compare

vcf2maf

vep

vidarr

Analysis provenance tracking server

vidarr-tools

The home of Python tools for use with Víðarr

virusbreakend

OICR Genomics WDL for VIRUSBreakend

virusdetection

OICR Genomics kraken2 WDL workflow

wdlviz

Python tool to create DOT diagrams for WDL workflows

wf_cfmedip

Workflow for cfMeDIP data analysis using Docker

wf_cfmedip-legacy

Workflow for cfMeDIP data analysis using Docker

wgsmetrics

Wrapper for picard WGSMetrics

wgspipeline