Comments (4)
Hi @splaisan,
If you only would like to keep the original contig IDs, then simply setting --keep-contig-headers
should work.
There are some other parameters that might be interesting/helpful. You can find a full description here: https://github.com/oschwengers/bakta#usage
Please, do not hesitate to ask, if there are any further questions.
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Maybe I can use --replicons and a minimalist table with only 'original sequence id' and the same 'new sequence id' to force the names to the original flye contig names?!
Just found the comment in the doc😅 and will try this tomorrow
Maybe an option '--keep_names' with defaut to false could help here for other people with the same issue.
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How could i mis this one, i definitely have to read the usage more carefully 🤣
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You're welcome ;-)
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