Comments (1)
oschwengers
commented on June 28, 2024
Hi @YuLanSky ,
thanks for reaching out and asking. I guess, this is rather a general issue with still lacking support for M1/M2 in Bioconda. Hence, may I kindly refer you to the Bioconda GH repository: https://github.com/bioconda/bioconda-recipes/
Until there is a general upstream fix for that and if your analyses do not depend on CRISPR arrays, you could build your own Conda environment for Bakta w/o Piler-CR and then skip this step in Bakta via --skip-crispr.
Since I do not have a Mac do not know about Bioconda's potential M1/M2 support route, I'm very sorry that I cannot provide more support in this case. But I'm pretty sure that many people are interest in that and that Bioconda maintainers can give more answers.
Best regards
Oliver
from bakta.
Related Issues (20)
- Exception: amrfinder error! error code: 1 HOT 4
- CRISPR detection error or something else? HOT 6
- Fix runtime duration report
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- Transfer annotations from similar genome HOT 5
- Add import feature for user-provided regions and/or features HOT 16
- ERROR: Could not detect/read %s version!', command[0] HOT 2
- Increasing genome annotation: integrating StORF-Reporter functionality into bakta HOT 3
- pyrodigal issues with fresh 1.8.2 conda install HOT 5
- produce the --replicons input content based on the flye assembly_info.txt HOT 3
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- bakta is renaming input contigs in its outputs HOT 4
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- %2C instead of common in GFF3 files HOT 4
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- origin of replication detection not match Ori-Finder web server HOT 1
- Option to Skip the AMR detection step HOT 5
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