pythseq Goto Github PK

16s_emu_pipeline

1806

18.06 course at MIT

2015

Public material for CS109

2016_06_14_tennisatp

2017-10-longreads-training

2017-dibsi-rnaseq

2019-01-17-rstudioconf

2019-bias-manuscript

Analysis for McLaren, Willis, and Callahan (2019)

2019-winter-bioinformatics_command_line_and_r_prerequisites_workshop

An introduction to the basics of bioinformatics for biologists. No data analysis experience necessary.

2019_embl-abr_snakemake_webinar

Scripts and Snakemake pipeline used in the EMBL-ABR webinar

2020-aa-abund

Testing amino acid abundance estimation pipelines

2020-charcoal-sankey

sankey diagrams from charcoal output

2020-long-read-assembly-decontam

Try 2 of detecting/removing microbial contamination from long-read assemblies.

3d-dna

3D de novo assembly (3D DNA) pipeline

3d-ken-burns

an implementation of 3D Ken Burns Effect from a Single Image using PyTorch

4seqgui

GUI

500-ai-machine-learning-deep-learning-computer-vision-nlp-projects-with-code

500 AI Machine learning Deep learning Computer vision NLP Projects with code

996.icu

Repo for counting stars and contributing. Press F to pay respect to glorious developers.

abyss

:microscope: Assemble large genomes using short reads

acastellanii_genome_annotation

Reproducible container-based pipeline for the annotation of the Acanthamoeba castellanii genome

acastellanii_hybrid_assembly

Hybrid genome assembly of Acanthamoeba castellanii. Combining long reads, Hi-C and shotgun.

acastellanii_legionella_infection

Analysis of genomic changes induced in Acanthamoeba castellanii C3 following infection by Legionella pneumophila

accel-align-release

A fast seed-embed-extend based sequence mapper and aligner

accnetphyla

This Perl script AccNetPhylA (Accessory Constellation Network with Phylogenetic Analysis) takes up most of the analysis of AccNET (Accessory Constellation Network) (Val F. Lanza et al., 2016) by replacing the clustering tool kClust (Hauser et al., 2013) with CD-HIT (Weizhong Li et al., 2001) for analysis with nucleotide and protein sequences. "AccNET is a comparative genomic tool for accessory genome analysis using bipartite networks. The software has been designed to be compatible with most of the Network Analysis software (i.e. Cytoscape, Gephi or R)."

acronym

ACRONYM (Acronym CReatiON for You and Me)

acwj

A Compiler Writing Journey

ad-gse132177-alternative-splicing-pipeline

Alternative splicing analysis of GSE132177 dataset using rMATS and plotting using rmats2sashimiplot and maser.

adam_kolyfetis_2021_methanogenesis

supplementary scripts for Adam et Kolyfetis 2021

adapters

Adapters for trimming

adv-r

Advanced R programming: a book