Comments (2)
oushujun
commented on June 12, 2024
Hello Wang,
What is the EDTA version you are using? RepeatMasker and RepeatModeler may use 4x the threads you give via the -pa parameter. The latest EDTA version has reduced the number of threads to 1/4 that passed to -pa. If you still have issues, please contact the RepeatModeler developer: https://github.com/Dfam-consortium/RepeatModeler
Thank you for using EDTA!
Shujun
from edta.
chao77777777
commented on June 12, 2024
Hi Shujun，
Thanks for your reply . I need to update EDTA.
Extensive de-novo TE Annotator (EDTA) v2.0.1.
Best wishes，
Wang
from edta.
Related Issues (20)
- Question about MITEs HOT 1
- Empty sum file, gff2bed errors HOT 3
- There are many overlapping regions of TE
- Many overlapping regions of TE HOT 1
- CACTA HOT 4
- LAI values from LTRRetrivar HOT 1
- LAI HOT 2
- Multiple EDTAs in parallel HOT 1
- LTR_retriever": No such file or directory at /home/ubuntu/deru/EDTA/EDTA_raw.pl line 307. HOT 6
- Are "Unknowns" Unknown TEs or generally unknown repeats? HOT 3
- Further classification HOT 4
- SLURM-specific behavior: repeat content dramatically reduced but no errors HOT 12
- genome.fa problem HOT 7
- Error when running panEDTA HOT 4
- CACTA HOT 1
- lib-test.pl -std and -tst must have different input file name HOT 1
- Structural TEs appear not to be renamed by panEDTA HOT 6
- The statistical results of the EDTA.TEanno.gff3 and the EDTA.TEanno.sum are inconsistent. HOT 2
- Helitron results file has 0bp! HOT 6
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