Error when running panEDTA about edta

[oushujun]

Hi Cui,

Looks like you need to reinstall numpy and h5py. If your HPC also has module managed programs, please unload all the modules before installing and using the conda version of EDTA. You need to make sure EDTA is working properly before using panEDTA.

Thanks,
Shujun

[smallfishcui]

Hi Shujun,

Thank you very much for your prompt reply! I tried to sed other directories from $PATH, and only keep the bioconda and basic paths,and then I run EDTA again, and get this message. I saw other posts that this indicates some sort of error, is it? IS it still the installation problem? My first run was also like this, and I used --force=1, but I guess I shouldn't do it that way.

best,
Cui

[oushujun]

Hi Cui,

Yes looks like the installation is not correct, which could be due to setting paths and also using conda env. It's still possible to install this way, but you need to pass the test using the small test files to make sure your installation is good.

Shujun