Comments (1)
Hello,
Sorry for the delay. Please check out the wiki to better understand the output gff file. Also, naturally nested structures are prevalent. Misannotations are also likely for cases like tandem repeats.
Shujun
from edta.
Related Issues (20)
- Question about threads HOT 2
- Question about MITEs HOT 1
- Empty sum file, gff2bed errors HOT 3
- There are many overlapping regions of TE
- CACTA HOT 4
- LAI values from LTRRetrivar HOT 1
- LAI HOT 2
- Multiple EDTAs in parallel HOT 1
- LTR_retriever": No such file or directory at /home/ubuntu/deru/EDTA/EDTA_raw.pl line 307. HOT 6
- Are "Unknowns" Unknown TEs or generally unknown repeats? HOT 3
- Further classification HOT 4
- SLURM-specific behavior: repeat content dramatically reduced but no errors HOT 12
- genome.fa problem HOT 7
- Error when running panEDTA HOT 4
- CACTA HOT 1
- lib-test.pl -std and -tst must have different input file name HOT 1
- Structural TEs appear not to be renamed by panEDTA HOT 6
- The statistical results of the EDTA.TEanno.gff3 and the EDTA.TEanno.sum are inconsistent. HOT 2
- Helitron results file has 0bp! HOT 6
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from edta.