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2022-03-29-cell-profiler

2022-04-28-fiji

2022-05-26-deep-learning-image-analysis-pytorch

deep learning for image analysis with PyTorch

2022-06-09-nextflow-programming

2022-06-17-intro-to-hpc

2022-08-16-the-bash-shell

https://thejacksonlaboratory.github.io/2022-08-16-the-bash-shell/

2022-08-29-cell-profiler

2022-08-30-cellprofiler-bootcamp

2022-10-10-machine-learning-quant-behavior

2022-11-09-omero

2022-12-06-nextflow

2023-02-01-the-bash-shell

https://thejacksonlaboratory.github.io/2023-02-01-the-bash-shell/

3d-reconstruction

acm-bcb-singularity2021

Singularity Course Repo for 2021 ACM-BCB Conference

aginghistology

This Repository holds information about Large scale Processing of Images to assess histological phenotypes in relation to aging.

alignment_projects

Aligner for large scale serial section image data

alignment_tutorial

Learn how to use the 'Alignment_Projects' serial section aligner.

alport_shinyapps

ShinyApp created by @ytakemon to share Col4a5xDO projects

amazon-ebs-autoscale

Don't run out of disk space on your EC2 instance when generating or working with large files. Automatically add EBS volumes to a filesystem mount point in response to disk utilization.

ampad_archetypes

Analysis of AMP-AD gene expression data to characterize LOAD heterogeneity using archetype analysis

ampad_submodules

Analysis of AMP-AD gene expression data to detect submodules and heterogeneity relevant for LOAD, published in Milind et al. 2020

archive_crawler

Crawl the archive, examine and ingest metadata

archived_metadata_ingester

Seeks json files and ingests their contents into mongodb, with filters and adjustments as needed

atac-seq

ATAC-seq Pipeline in conjunction with Duygu Ucar & Jacques Banchereau Laboratories

bam2af

basic-browser

basic_skimagejax

Tutorials for using scikit-image, written for The Jackson Laboratory

batch-image-analysis

bd2k-workshop

bestpractices_workshop

Draft repo for the "best practices" workshop