thejacksonlaboratory Goto Github PK

mme

Messangial Matrix Expansion

mmrsvd

Nextflow implementation of structural variant callers for short- and long-read genomics data

mousegwas

An R package for easy execution of mouse GWAS

mtdna-evolution

Longitudinal analysis of mitochondrial genome evolution

mthfr_c667t

napari_omero_rois

Saving napari ROIs into OMERO

ncells

Calculating the number of cells in single cell RNA-seq experiments

neurogenetics-workshop

Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll

nextflow-demo

nextflow-sra-cloud

Nextflow example to download SRA files available on the cloud

nf-core-atacseq

A modified version of the peer reviewed nf-core/atacseq analysis pipeline

nf-core-rnaseq

A modified version of the peer reviewed nf-core/rnaseq analysis pipeline

nf-tenx

All 10x Genomics processing pipelines rolled into one containerized pipelines

nih_biosketch_postdoc

A LaTeX class implementing the new NIH Biographical Sketch Format

notnmd

omero-dashboard

Code for deploying a dashboard for OMERO using flask and plotly

omero-training-materials

Repo with materials for OMERO training and scripts to set up a training server.

omero_for_developers

material for the "OMERO for developers" workshop.

omero_plate_annotation

an example script to create MapAnnotations for wells in a plate based on a csv file

openmicroscopy

OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.

openrefine-ecology-lesson

Lesson on OpenRefine for ecology

opentrons-protocols

Protocols for the Opentrons OT-2 lab robot

osdf_submit

Stanford/JAX-GM submission metadata to OSDF; boilerplate files.

pdx-analysis-workflows

pdx-nextflow

pdx-soc

Drug response graphs for PDX tumors

pdxintegrator

Code for mapping PDX Net data to a common data model

pee-h-calculator

phenix-service

phenologic

Computational design patterns for phenotype ontologies