Topic: scverse Goto Github
Some thing interesting about scverse
Some thing interesting about scverse
scverse,Awesome GRN enhanced AnnData toolkit
Organization: cantinilab
Home Page: https://cantinilab.github.io/GRnnData/
scverse,Feature-rich Python implementation of the tximport package for gene count estimation.
Organization: complextissue
Home Page: https://pytximport.readthedocs.io
scverse,Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
Organization: icbi-lab
Home Page: https://infercnvpy.readthedocs.io/en/latest/
scverse,Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData
Organization: metaspace2020
Home Page: https://metaspace2020.github.io/metaspace-converter/
scverse,A single cell transcriptomics pipeline for QC, integration and making the data presentable
Organization: nf-core
Home Page: https://nf-co.re/scdownstream
scverse,Annotated data.
Organization: scverse
Home Page: http://anndata.readthedocs.io
scverse,Governance docs for scverse
Organization: scverse
Home Page: https://scverse.org/about
scverse,Multimodal Data (.h5mu) implementation for Python
Organization: scverse
Home Page: https://mudata.rtfd.io
scverse,muon is a multimodal omics Python framework
Organization: scverse
Home Page: https://muon.scverse.org/
scverse,Tutorials for multimodal omics data analysis
Organization: scverse
Home Page: https://muon-tutorials.rtfd.io/
scverse,Muon for Julia
Organization: scverse
Home Page: https://scverse.github.io/Muon.jl/dev
scverse,Perturbation Analysis in the scverse ecosystem.
Organization: scverse
Home Page: https://pertpy.readthedocs.io/en/latest/
scverse,Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.
Organization: scverse
Home Page: https://rapids-singlecell.readthedocs.io/
scverse,Single-cell analysis in Python. Scales to >1M cells.
Organization: scverse
Home Page: https://scanpy.readthedocs.io
scverse,Deep probabilistic analysis of single-cell and spatial omics data
Organization: scverse
Home Page: http://scvi-tools.org/
scverse,Notebooks used in scvi-tools tutorials
Organization: scverse
Home Page: https://docs.scvi-tools.org/en/stable/tutorials/index.html
scverse,Electronic Health Record Analysis with Python.
Organization: theislab
Home Page: https://ehrapy.readthedocs.io/
scverse,experimental interface between R and scvi-tools
User: vjcitn
Home Page: https://vjcitn.github.io/scviR
scverse,scverse lineage tracing analysis toolkit
Organization: yoseflab
Home Page: https://pycea.readthedocs.io/
scverse,anndata with trees
Organization: yoseflab
Home Page: https://treedata.readthedocs.io
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