Topic: deseq2 Goto Github
Some thing interesting about deseq2
Some thing interesting about deseq2
deseq2,This tutorial is created for educational purpose
User: amarinderthind
deseq2,Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.
User: bissessk
deseq2,A shiny application to perform differential gene expression analysis of count data using DESeq2. The app also allows unsupervised exploration of data using PCA and hierarchical clustering.
User: bixbeta
Home Page: https://bixbeta.shinyapps.io/PCA-Explorer/
deseq2,Code and scripts for the RNA-seq analysis of project: SMG5-SMG7 authorize nonsense-mediated mRNA decay by enabling SMG6 endonucleolytic activity
User: boehmv
Home Page: http://www.uni-koeln.de/math-nat-fak/genetik/groups/Gehring/#home
deseq2,Code and scripts for the RNA-seq analysis of project: Deciphering the cellular roles and dissecting functional regions of UPF3A and UPF3B in human NMD
User: boehmv
Home Page: http://www.uni-koeln.de/math-nat-fak/genetik/groups/Gehring/#home
deseq2,single cell and bulk RNASeq analysis scripts
User: cemalley
deseq2,A shiny app to perform single and multifactor differential analysis using DESeq2, edgeR, and limma
Organization: datasnakes
Home Page: http://www.datasnakes.org/RNASeek
deseq2,Iteratively randomly pooling scRNA-seq expressing a given gene from different numbers of cells and running DESeq2 with fdrtools correction to determine how many times which genes come out as enriched with said gene
User: dgavr
Home Page: https://www.biorxiv.org/content/biorxiv/early/2017/11/22/213611.full.pdf
deseq2,Developmental timeseries of the reef-building coral Montipora capitata under predicted low and extreme low ocean acidification scenarios
User: echille
deseq2,Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
Organization: emoryintegratedcomputationalcore
deseq2,A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)
User: eonurk
Home Page: https://eonurk.github.io/cinaR/
deseq2, A quick recap of widely used differential analyses methods in R for RNA-seq experiments
User: eonurk
deseq2,This repository houses the pipeline I coded to perform differential analysis of transcriptomes from two oyster species, C. gigas and C. virginica and isolate genes in the apoptosis pathway.
User: erinwitkop
deseq2,linked with Bioinformatics analysis
User: esharathgoud
deseq2,:bar_chart: :clipboard: Bioconductor R package with Graphical Interface to handle multi-omic data by Classification, Enrichment and Network inference.
User: fjeanneret
deseq2,Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last module of the project allows you to use clusterprofiler in order to perform ORA and GSEA analysis (over-representation analysis and gene set enrichment analysis) using GeneOntology (GO), disease ontology (DO), KEGG, reactome eg...
User: francescopatane96
deseq2,
Organization: hbctraining
Home Page: https://hbctraining.github.io/DGE_workshop/
deseq2,
Organization: hbctraining
Home Page: https://hbctraining.github.io/Intro-to-R-with-DGE/
deseq2,interactive Bioinformatics Exploratory Tools
User: j-andrews7
deseq2,Scripts to run differential expression analysis using DESeq2 package
User: kpatel427
deseq2,R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
Organization: leekgroup
Home Page: https://jhubiostatistics.shinyapps.io/recount/
deseq2,Generate HTML report for a set of genomic regions or DESeq2/edgeR results
Organization: leekgroup
Home Page: http://leekgroup.github.io/regionReport
deseq2,Public repo for the recount Bioconductor workflow that is visible at http://bioconductor.org/help/workflows/
Organization: lieberinstitute
deseq2,Package for the recount workshop for BioC2017
Organization: lieberinstitute
deseq2,R scripts used for the analysis of microbiomes associated with stony coral tissue loss disease (SCTLD) in the Florida Reef Tract
Organization: meyermicrobiolab
deseq2,R Markdown script to perform standard analysis steps for bulk RNA-seq count matrices. Analysis steps include: Adding biomaRt annotation, filtering and QC, normalization, general visualization (PCA, heatmaps), k-means clustering + ORA, differential expression testing via DESeq2 + GSEA, and finally export of results as text file and html report.
User: moritzmadern
deseq2,a web-based R shiny application that wraps DESeq2 R package
User: nasqar
Home Page: http://nasqar.abudhabi.nyu.edu/deseq2shiny/
deseq2,NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization
User: nasqar
Home Page: http://nasqar.abudhabi.nyu.edu
deseq2,Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
Organization: nf-core
Home Page: https://nf-co.re/differentialabundance
deseq2,Pipeline of somatic variant analysis using Waldenstrom macroglobulinemia patient’s RNA-seq data, including tools like STAR, HTseq, VarScan in parallel computing in SGE clusters, Deseq2 and GSEA in R
User: nyuhuyang
deseq2,An application for exploring and visualizing differential gene expression data created with DESeq2
User: pblumenkamp
deseq2,Differential expression analysis: DESeq2, edgeR, limma. Realized in python based on rpy2
User: peterlipan
deseq2,Statistical Analysis of RNA-Seq Tools
Organization: pf2-pasteur-fr
deseq2,Galaxy wrappers for SARTools (Statistical Analysis of RNA-Seq Tools)
Organization: pf2-pasteur-fr
deseq2,Differential gene expression analysis and pathway analysis of RNAseq data
Organization: qbic-pipelines
deseq2,My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq
User: raymondkiu
deseq2,Scripts for analysis of metatranscriptomic and 16S rRNA amplicon data from wild oysters in Narragansett Bay
User: rjstevick
deseq2,Code for processing and analysis of TAGseq data in "The Effects of IKKβ Inhibition on Early NF-κB Activation and Transcription of Downstream Genes". Modified repository from https://github.com/z0on/tag-based_RNAseq.
User: sachitsaksena
deseq2,Analysis of RNA-seq data using DESeq2
User: shamitashetty
deseq2,Performing RNA-Seq data analysis and quality control using DESeq2 in R.
User: sivkri
deseq2,RNA-seq workflow using STAR and DESeq2
Organization: snakemake-workflows
deseq2,Probabilistic outlier identification for bulk RNA sequencing data
User: stemangiola
deseq2,Brings bulk and pseudobulk transcriptomics to the tidyverse
User: stemangiola
deseq2,Repository miscellaneous R scripts including scripts for RNAseq analysis
User: svsuresh
deseq2,Perform differential analysis from FastQ files with Salmon, tximport, and DESeq2
User: tdayris-perso
deseq2,Transcript quantification import for modular pipelines
Organization: thelovelab
deseq2,Análise de RNA-seq - Abundância de Transcritos Utilizando kallisto, tximport e DESeq2
User: washingtoncandeia
deseq2,This repository provides scripts for the 16S microbiome analysis and metagenome prediction using linux and R-Studio
User: zubair2021
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