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rna-sequence-analysis-non-model-species-eastern-larch

rna-ssp

RNA Secondary Structure Prediction with Deep Learning

rna_homology_modeling

A framework for RNA homology modeling served on Google App Engine

rna_in_water

RNA Molecular Dynamics Simulation in water and how changes on temperature and ions affect structure

rnadetector

RNAdetector: a free user-friendly and stand-alone software for RNA-Seq data analysis

rnafusion

RNA-seq analysis pipeline for detection gene-fusions

rnaifold

A constraint programming algorithm for RNA inverse folding and molecular design

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

rnaseq-workflow

A repository for setting up a RNAseq workflow

rnaseq_pipeline

rnaseqlib

RNA-Seq pipeline

rnaseqrdata

The experiment package for RNASeqWorkflow

rnasketch

Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.

rncl

An R interface to the Nexus Class Library (C++) to read in quickly large phylogenetic trees and data

rnn

Recurrent Neural Networks in R

rnn-drug-generation

A Study on Recurrent Architecture for De Novo Drug Generation

rnn_generator

robust

Tools to calculate descriptors from molecular dynamics and it's application to predict drug resistance.

rocketsled

plug-n-play black box optimizer for high-throughput computing

rocking-dipole

Electric dipole in uniform electric field

rocr

An R package for visualizing classifier performance (Sing/Sander/Beerenwinkel/Lengauer [2005] Bioinformatics)

rollout_plotter

plotting scripts for outputs from the rollout/RNAfold algorithm

ropencvlite

Utility package to install OpenCV in R

roptim

General Purpose Optimization in R using C++: provides a unified C++ wrapper to call functions of the algorithms underlying the optim() solver

rosenet

rosetta_modifications

Rosetta - RNA homology modelling scripts

rosetta_rna_homology_modeling_examples

Examples of how to use Rosetta protocols to homology model two different RNA targets

rosettafold

This package contains deep learning models and related scripts for RoseTTAFold

rosettafold_docker

Docker image for the RoseTTAFold system from the UW Baker Lab.

rotl

Interface to Open Tree of Life API