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bio_residuebasedpeptidegeneration

bioconceptvec

biodegradability_prediction_qsar_gcn

Code for "A Comparative Study of the Performance for Predicting Biodegradability Classification: The Quantitative Structure–Activity Relationship Model vs the Graph Convolutional Network" (https://doi.org/10.1021/acsomega.1c06274)

biodegradable_chemicals

Learning models on a data set containing values for 41 attributes (molecular descriptors) used to classify 1055 chemicals into 2 classes (ready and non-ready biodegradable)

biofsharp

Open source bioinformatics and computational biology toolbox written in F#.

bioinfo-toolbox

bioinfohub

bioinfokit

Bioinformatics data analysis and visualization toolkit

bioinformatics-parameters-calculator

Web-app to calculate the molecule's descriptors like molecular weight, Dihedral Angles, Solubility by taking the input in SMILES notation

bioinformatics-with-python-cookbook-second-edition

Bioinformatics with Python Cookbook Second Edition, published by Packt

bioinformatics-workflows

minimal example implementations for bioinformatics workflow managers

biomedr

generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.

biomolecular-design-database

The Biomolecular Design Database Project is a web application that allows users to share, search and use nucleic acid nanotechnology designs. This includes DNA Origami, RNA Origami, DNA Bricks and many other types of systems.

biomtl

Prediction of biological activity for nuclear receptors

bionet-synthesis

bionitio-python

Demonstrating best practices for bioinformatics command line tools

bionoinet

Pytorch implementation of BionoiNet, which is a deep learning-based software to classify ligand-binding sites.

biooutputs

An R package to create common outputs used in bioinformatical analyses and visualisations

biorssay

An R package for analyses of bioassays and probit graphs

bioscripts

Cool Bioinformatics Scripts

bioscripts-1

bunch of scripts for homology modeling and molecular dynamics

bioseq

A Toolbox for Manipulating Biological Sequences in R

bioseq-gfn-al

Code for "Biological Sequence Design with GFlowNets", 2022

biotite

A comprehensive library for computational molecular biology

biotools

A list of useful bioinformatics resources

birds

bisct

Bayesian Inference for Substance and Chemical Toxicity

bitclust

Fast clustering of long Molecular Dynamics

blade

BLaDE is a Basic Lambda Dynamics Engine for molecular dynamics based alchemical free energy calculations using multisite lambda dynamics on graphical processor units.

blindrecalc

Compute characteristics and plots for blinded sample size recalculation