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rnaimehaom's Projects

variational-synthesis icon variational-synthesis

Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AISTATS, 2022).

vc-optimization-cardiotoxicity icon vc-optimization-cardiotoxicity

Includes all the modeling, genetic algorithm simulations, and data analysis for the Christini Lab paper on drug cardiotoxicity screening with an optimized VC protocol

vcf-miner icon vcf-miner

VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files

vcf-plotein icon vcf-plotein

Visualisation and prioritisation of genomic variants from human exome sequencing projects

vcfpp icon vcfpp

vcfpp is a single C++ file for manipulating VCF/BCF format in a scripting way :)

vctrs icon vctrs

Generic programming with typed R vectors

vdssb_gromacs icon vdssb_gromacs

Tutorial for computing the dissociation free energies in drug-receptor systems by way nonequilibrium vDSSB using the gromacs GROMACS on HPC platforms

vermeulen icon vermeulen

Biomarker data set by Vermeulen et al. (2009) <https://doi.org/10.1016/S1470-2045%2809%2970154-8>

vflib icon vflib

CDK compatible VF library for substructure and MCS search

vflp icon vflp

VirtualFlow for Ligand Preparation

vfvs icon vfvs

VirtualFlow for Virtual Screening

viash icon viash

script + metadata = standalone component

viennarna-1 icon viennarna-1

ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures

vimp icon vimp

Perform inference on algorithm-agnostic variable importance

vina-gpu icon vina-gpu

A heterogeneous OpenCL implementation of AutoDock Vina

vinalc icon vinalc

A parallel molecular docking program based on AutoDock Vina

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