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treegrafter

TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.

treelink

Data Integration, Clustering and Visualization of Phylogenetic Trees

treesearch

R package for phylogenetic tree search under custom optimality criteria

treetools

Create, modify and analyse phylogenetic trees in R

treetuner

A pipeline for minimizing redundancy and complexity in large phylogenetic datasets

tremd-gromacs

Script to run Replica Exchange Molecular Dynamics simulation in GROMACS

trimgalore

A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

trimmomatic

trip

A Prior of a Googol Gaussians: a Tensor Ring Induced Prior for Generative Models

trna_thread

Scripts and resources for automated homology modeling of tRNAs

troj

Toolbox for evaluation of chemical properties of substances.

trscreening

Bidirectional screening for drug discovery

trust

Efficiently search and mine for specific (targeted) classes/slices in your dataset to improve model performance and personalize your models.

ts_gen

Generate 3D transition state geometries with GNNs

tsdfgs

Training set determination for genomic selection

tsnad

An integrated pipeline for neoantigen prediction from NGS data.

ttclust

clusterize molecular dynamic trajectories (amber, gromacs, charmm, namd, pdb...)

tucan

A molecular identifier and descriptor for all domains of chemistry.

turbo-chem

Predicting chemical structures from physicochemical properties

tutorial-lmp

Running a molecular simulation with the polarizable force field in LAMMPS

tutorial_dctmd

Tutorial for the usage of the dcTMD approach and Langevin simulations employing the trypsin-benzamidine complex as example.

tutorial_gromacs

Tutorial Gromacs Protein-Ligand

twosamples

Fast Permutation Based Two Sample Tests

udpipe

R package for Tokenization, Parts of Speech Tagging, Lemmatization and Dependency Parsing Based on the UDPipe Natural Language Processing Toolkit

ug-rnn

Deep Architectures and Deep Learning in Chemoinformatics: The Prediction of Aqueous Solubility for Drug-Like Molecules

ugene

UGENE is free open-source cross-platform bioinformatics software

ugm_2019

ugm_2022

Materials from the 2022 UGM

ultra

ULTRA Locates Tandemly Repetitive Areas

umap

Uniform Manifold Approximation and Projection - R package