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pep-prop

Calculate physico chemical properties of a peptide

pepbcl

We propose PepBCL, a novel BERT (Bidirectional Encoder Representation from Transformers)-based Contrastive Learning framework to predict the protein-Peptide binding residues based on protein sequences only.

pepfrag

Sub-sequence generation for peptide array design

pepfun

Bioinformatics and Cheminformatics protocols for peptide analysis

peplide

A tool to design inhibitory peptide sequences using crystal complex structure

peprobe

Covalent peptide binder design

pepsirf

PepSIRF: Peptide-based Serological Immune Response Framework

pepsy

An open-source automated peptide synthesizer based on Arduino and Python

pepsyn

Peptide library design

peptide-design

Design selective peptides targeting SH2 domains

peptide-encoder

An encoder for peptides (short amino acid sequences) based on BLOSUM similarity.

peptide-mhc-binding-prediction

Peptide-MHC Binding prediction based on Gated-DenseNet

peptide-properties-prediction

Protein properties prediction: Q3/Q8 secondary structures, soluble/membrane-bound properties using BERT Embeddings

peptide-self-assembly-design-pepsad

peptide_design

This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"

peptide_library_design

peptide_viewer

Java standalone app. Parses and compares .fasta and OMSSA output to generate visuals and statistics based on the matching peptides

peptidedesignga

peptideinhibitor

A Reverse Structure-Based Design of HPV E7 Inhibitor

peptides

An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.

peptides.py

Physicochemical properties, indices and descriptors for amino-acid sequences.

peptidetempvae

Coupling softmax with temperature factor on VAE to design anti-microbial peptides (AMPs).

peptimizer

Peptide optimization with Machine Learning

pepto-gan

a generative adversarial network designed to generate novel toxic peptides for synthesis in a lab.

peptools

PepTools - An Immunoinformatics (Immunological Bioinformatics) R-package for working with peptide data

performance

:muscle: Models' quality and performance metrics (R2, ICC, LOO, AIC, BF, ...)

periodicdata

R package with properties of the chemical elements, scraped from public sources

perses

Experiments with expanded ensembles to explore chemical space

pes-learn

Automated Generation of Machine Learning Models of Molecular Potential Energy Surfaces

pfas

source code for detecting PFAS compounds