danielecook / awesome-bioinformatics Goto Github PK
View Code? Open in Web Editor NEWA curated list of awesome Bioinformatics libraries and software.
A curated list of awesome Bioinformatics libraries and software.
Github-Pages can now be easily enabled throughout the project-settings ๐คฉ
After that we should be able to surf on https://danielecook.github.io/Awesome-Bioinformatics and view just the README.md like on https://tgotwig.github.io/Awesome-Bioinformatics ๐โโ๏ธ
We could reference this link inside the about-section of this project โ๏ธ
The above packages: bioconductor, biopython, bioconda, usegalaxy are quite popular in the bioinformatics community.
Shoud we add those to the list of tools?
I believe that BioJava and NCBI C++ Toolkit are slightly influential libraries in the field of bioinformatics. They should be appended to the list.
I have been scouring the web for bioinformatics slack groups, and wanted to share the ones I have found.
Would you be willing to add a section for slack groups? If not, I could also create my own list.
What do you think about adding a Travis CI script for awesome_bot
to validate links on the page in case some go old and stop working?
Source: https://github.com/dkhamsing/awesome_bot
You just need to make a .travis.yml
file with the following:
language: ruby
rvm: 2.2
before_script: gem install awesome_bot
script: awesome_bot README.md
notifications:
email: false
Here are some other options you can use while checking links
Usage: awesome_bot [file or files]
awesome_bot [options]
-f, --files [files] Comma separated files to check
-a, --allow [errors] Status code errors to allow
--allow-dupe Duplicate URLs are allowed
--allow-ssl SSL errors are allowed
--allow-redirect Redirected URLs are allowed
--allow-timeout URLs that time out are allowed
-t, --set-timeout [seconds] Set connection timeout
-w, --white-list [urls] Comma separated URLs to white list
Hi @danielecook,
Have you considered trying to add this repo to the awesome repo list along with the other awesome repos? I think it'd be a great addition.
I would suggest to always link to the source-code repository of an project in order to have more consistency, because it's much easier to go from there to the portfolio site than the other way around, sometimes the source-code repository is not even mentioned on the portfolio website ๐ฌ
I would suggest to reorder some sections lexicographically, like in awesome-rust ๐ฆ
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